GBrowse Details

Vigan.03G118600.01

Basic Information:
Name: Vigan.03G118600.01
Multiple alignment
Variant Information
Position: Chr03:12700008..12702054 (+ strand)
Length: 2047
Functional Information:
Description: Similar to uncharacterized protein. [C6SVN9, Glycine max]
GO: Biological Process: ATP synthesis coupled proton transport (GO:0015986)
Cellular Component: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) (GO:0000275)
Molecular Function: proton-transporting ATP synthase activity, rotational mechanism (GO:0046933)
Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961)
InterPro: ATPase, F1 complex, epsilon subunit, mitochondrial (IPR006721)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:63.63,44.71,118.37,68.38,151.73,202.95,100.63,78.58
Arabidopsis thaliana homolog: AT1G51650.1
Automatic updates:
Name: NM_001354133 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP synthase subunit epsilon, mitochondrial (LOC100499703), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:12700008..12700198 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr03:12700199..12700382 (+ strand)
Length: 184
Type: CDS
Position: Chr03:12701556..12701584 (+ strand)
Length: 29
Type: CDS
Position: Chr03:12701585..12702054 (+ strand)
Length: 470
Type: three_prime_UTR


>Vigan.03G118600.01
CGGAGAACAA TGTAGAAAAG TAAAAATGAA AAATAAAAGT GGGCCGAGAA GTAAAACGAA GGGCTGGGCT TAGAGACAGC
CCATATAACA GTGTGACTGA TTGATTCGAT GCATTGGTGT TGTTAAGGAA GAAAGGGTAC GGTGTCGGAG AGAAGGAGTG
TTAGTGTTGG GAAAAGAAAG AAAGTGTGAA GATGGCGTCG AGCGGAGCGG TGCCGTTTTG GAGAGCAGCG GGTATGACCT
ACATCACATA CTCTAACATA TGTGCCAATC TCGTCAGAAA TTGCCTCAAG GAACCCTACA AGGCCGAAGC CCTCTCTCGT
GAGAAGGTCC ATTTCTCTCT CTCCAAATGG GTCGAGGGCA AGCCTGAAAA ACCAACTGTT CGTTCTGACA CCCCAGGGCA
GTGATTCGGA ATGCTGGAAG CAATAAATGC ATAAATCATT GATATCTGGA AGTTAATTGT CATTTTGAAC CTTTTGTGGT
TTTTTATGTT TAATTTCTTT GTTTTTTTTC TTTCCATGAA AAAAAACATT ACTGGATTTT GATTCCGATG GTTATTCTTG
TAATAATGAA GTTTAAACAA ATGATTTTGA ACTTAATGAC AAGTGGCTTT GCACTTCAAT CTGCTTCCAG GTCCTGAAAT
GAGAAAGCTG CTCAACTATG TTAAGCTGGC TCATAAGTTT GTGAAATAAT CCTTGAATAA ATTGAAATAA ATCAGGTTTA
TATTTTTATT ACGATATTTG AAGATTCATC AACACAGAAT GCTTCATGGT TGATTTTATT ATACCGAGTT CCTATTAGCC
TTTGTAATTT CAATGATGTT TTTGAAGAAA AGTGGGATAT ATCATATCAC ACGCAATGCA TCTGTCAACC GATG

>Vigan.03G118600.01
ATGGCGTCGA GCGGAGCGGT GCCGTTTTGG AGAGCAGCGG GTATGACCTA CATCACATAC TCTAACATAT GTGCCAATCT
CGTCAGAAAT TGCCTCAAGG AACCCTACAA GGCCGAAGCC CTCTCTCGTG AGAAGGTCCA TTTCTCTCTC TCCAAATGGG
TCGAGGGCAA GCCTGAAAAA CCAACTGTTC GTTCTGACAC CCCAGGGCAG TGA

>Vigan.03G118600.01
MASSGAVPFW RAAGMTYITY SNICANLVRN CLKEPYKAEA LSREKVHFSL SKWVEGKPEK PTVRSDTPGQ *