GBrowse Details

Vigan.03G126400.01

Basic Information:
Name: Vigan.03G126400.01
Multiple alignment
Variant Information
Position: Chr03:13987855..13993624 (+ strand)
Length: 5770
Functional Information:
Description: Similar to Asparagine synthetase. [I1MBC5, Glycine max]
GO: Biological Process: asparagine biosynthetic process (GO:0006529)
Biological Process: metabolic process (GO:0008152)
Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity (GO:0004066)
InterPro: Class II glutamine amidotransferase domain (IPR000583)
Asparagine synthase (IPR001962)
Asparagine synthase, glutamine-hydrolyzing (IPR006426)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Glutamine amidotransferase type 2 domain (IPR017932)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.88,0.31,454.34,198.48,36.18,22.19,125.75,335.00
Arabidopsis thaliana homolog: AT3G47340.1, AT5G10240.1, AT5G65010.2
Automatic updates:
Name: NM_001248792 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max asparagine synthetase 2 (AS2), mRNA.
PubMed ID: 9037148 NCBI(pubmed)
Status: Known Variant
Name: NM_001362622 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max asparagine synthetase-like (LOC100797022), mRNA.
PubMed ID: 29626511 NCBI(pubmed)
25149281 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:13987855..13987958 (+ strand)
Length: 104
Type: five_prime_UTR
Position: Chr03:13987959..13988038 (+ strand)
Length: 80
Type: CDS
Position: Chr03:13989696..13989834 (+ strand)
Length: 139
Type: CDS
Position: Chr03:13990256..13990351 (+ strand)
Length: 96
Type: CDS
Position: Chr03:13991039..13991180 (+ strand)
Length: 142
Type: CDS
Position: Chr03:13991299..13991489 (+ strand)
Length: 191
Type: CDS
Position: Chr03:13991602..13991763 (+ strand)
Length: 162
Type: CDS
Position: Chr03:13991860..13991940 (+ strand)
Length: 81
Type: CDS
Position: Chr03:13992034..13992255 (+ strand)
Length: 222
Type: CDS
Position: Chr03:13992350..13992484 (+ strand)
Length: 135
Type: CDS
Position: Chr03:13992561..13992641 (+ strand)
Length: 81
Type: CDS
Position: Chr03:13992758..13992844 (+ strand)
Length: 87
Type: CDS
Position: Chr03:13992925..13993032 (+ strand)
Length: 108
Type: CDS
Position: Chr03:13993156..13993386 (+ strand)
Length: 231
Type: CDS
Position: Chr03:13993387..13993624 (+ strand)
Length: 238
Type: three_prime_UTR


>Vigan.03G126400.01
GTTCAACTTC TCCCACATTA TACGACGTCG TCGTCTTCTT GTTCTTCTTC TCTGCTCTTT TCTTTCTTTT CTTAGTCTGA
TTTTGATTCC ATTATCACAT CACAATGTGT GGTATTCTTG CTGTTCTTGG TTGTTCTGAT GACTCTCGAG CCAAAAGGGT
TCGCGTCCTA GAGCTCTCTC GCAGATTGAA GCACCGTGGG CCTGACTGGA GTGGGCTCCA TCAACATGGT GATTGCTTTT
TGGCGCATCA GCGTTTAGCC ATAGTAGATC CAGCTTCTGG GGATCAGCCT CTCTTCAACG AGGACAAATC CGTCATTGTC
ACGGTAAATG GAGAGATTTA CAACCATGAA GAACTCAGGA GACAGCTTCC TAATCACCAG TTCCGAACTG GAAGTGACTG
TGATGTTATA GCACACTTGT ACGAGGAACA TGGAGAAGAC TTTGTGGACA TGCTGGATGG TATCTTCTCG TTTGTTCTTC
TGGATACCCG TGACAACAGT TTTATAGTGG CTCGAGATGC TATAGGGGTC ACTTCCCTTT ACATTGGTTG GGGATTAGAT
GGCTCTGTTT GGATTTCGTC TGAAATGAAA GGCTTGAACG ATGATTGTGA ACATTTTGAG TGTTTTCCAC CTGGTCACTT
GTACTCGAGC AAAGAGAGAG GGTTTCGCCG ATGGTACAAT CCTCCTTGGT TCTCTGAGGC TATTCCATCT GCTCCTTACG
ACCCTCTAGC TTTGAGGCGT GCCTTTGAGC AGGCTGTCAT AAAAAGATTG ATGACTGATG TGCCTTTTGG TGTTCTACTT
TCTGGAGGTT TGGACTCTTC ATTGGTGGCA TCCATCACTT CTCGCTACTT GGCTAACACG AAGGCTGCTG AACAGTGGGG
ATCAAAGTTA CATTCTTTCT GTGTAGGACT TGAGGGCTCA CCAGATTTAA AGGCTGCAAA AGAGGTTGCT GACTATCTTG
GCACTGTCCA CCATGAGTTT CACTTCACTG TTCAGGATGG AATAGATGCC ATTGAGGATG TTATATACCA TATTGAAACA
TATGATGTGA CCACAATTAG AGCAAGCACG CCCATGTTTC TTATGTCTCG GAAGATTAAA TCACTAGGTG TGAAATGGGT
TATCACAGGA GAAGGATCAG ATGAGATCTT TGGAGGGTAT CTGTACTTCC ACAAGGCACC CAACAAGGAG GAGTTTCACA
GAGAAACATG CCGCAAGATC AAAGCACTCC ACCAATATGA CTGCTTGAGA GCAAATAAAT CAACATTTGC TTGGGGTCTA
GAAGCCCGAG TACCGTTTTT GGACAAGGCG TTTATCGATG CTGCAATGAA CATTGACCCC GAGTATAAAA TGATAAAAAG
AGATGAAGGA CGAATTGAGA AGTGGATTCT GAGGAGAGCC TTTGATGATG AAGAACATCC ATATCTGCCA AAGCACATAT
TATACAGGCA GAAAGAACAA TTCAGTGATG GAGTTGGGTA TAGTTGGATT GATGGCCTCA AGGCTCATGC TGCAAAACAT
GTGACTGACA GAATGATGTT GAATGCTGGT AACATCTACC CCCACAACAC CCCAATAACG AAGGAAGCAT ACTACTATAG
AATGATCTTT GAGAGGTTTT TCCCTCAGAA CTCAGCAAGG CTGACTGTTC CTGGAGGAGC AAGTGTTGCA TGCAGCACAG
CGAAAGCTGT TGAGTGGGAT GCTGCTTGGT CTGGCAACCT TGACCCTTCT GGTAGAGCAG CACTTGGAGT GCACATCTCA
GCTTATGACA AGCAGAACAA TTTAGCCAAC AAAGGTGTAG AAATTGAGAA GATTATACCT ATGGATGCTG CTCCTCTTGG
AGTTACCATC CAGGGCTAGT ATATATCAAG CTCTGTGACT AAGAATAATT GGCGAGAATG AAGATGATTA AGCTAAACAC
TATGAAAAAA TCGCCTGCTG TGTGATTTCA TCTTGGCAAA GCTTTATATA TATGTATGTA TATATATAAG GCTTTCTACA
AGAAGTGTTC AATGTAGTAT TACCTTCAAT TCTGTGATTT GAACTCTTAA TAAGAGTGTT TCTTTTGTTA AATATAAATG
CAAAATTCAT TATCTCA

>Vigan.03G126400.01
ATGTGTGGTA TTCTTGCTGT TCTTGGTTGT TCTGATGACT CTCGAGCCAA AAGGGTTCGC GTCCTAGAGC TCTCTCGCAG
ATTGAAGCAC CGTGGGCCTG ACTGGAGTGG GCTCCATCAA CATGGTGATT GCTTTTTGGC GCATCAGCGT TTAGCCATAG
TAGATCCAGC TTCTGGGGAT CAGCCTCTCT TCAACGAGGA CAAATCCGTC ATTGTCACGG TAAATGGAGA GATTTACAAC
CATGAAGAAC TCAGGAGACA GCTTCCTAAT CACCAGTTCC GAACTGGAAG TGACTGTGAT GTTATAGCAC ACTTGTACGA
GGAACATGGA GAAGACTTTG TGGACATGCT GGATGGTATC TTCTCGTTTG TTCTTCTGGA TACCCGTGAC AACAGTTTTA
TAGTGGCTCG AGATGCTATA GGGGTCACTT CCCTTTACAT TGGTTGGGGA TTAGATGGCT CTGTTTGGAT TTCGTCTGAA
ATGAAAGGCT TGAACGATGA TTGTGAACAT TTTGAGTGTT TTCCACCTGG TCACTTGTAC TCGAGCAAAG AGAGAGGGTT
TCGCCGATGG TACAATCCTC CTTGGTTCTC TGAGGCTATT CCATCTGCTC CTTACGACCC TCTAGCTTTG AGGCGTGCCT
TTGAGCAGGC TGTCATAAAA AGATTGATGA CTGATGTGCC TTTTGGTGTT CTACTTTCTG GAGGTTTGGA CTCTTCATTG
GTGGCATCCA TCACTTCTCG CTACTTGGCT AACACGAAGG CTGCTGAACA GTGGGGATCA AAGTTACATT CTTTCTGTGT
AGGACTTGAG GGCTCACCAG ATTTAAAGGC TGCAAAAGAG GTTGCTGACT ATCTTGGCAC TGTCCACCAT GAGTTTCACT
TCACTGTTCA GGATGGAATA GATGCCATTG AGGATGTTAT ATACCATATT GAAACATATG ATGTGACCAC AATTAGAGCA
AGCACGCCCA TGTTTCTTAT GTCTCGGAAG ATTAAATCAC TAGGTGTGAA ATGGGTTATC ACAGGAGAAG GATCAGATGA
GATCTTTGGA GGGTATCTGT ACTTCCACAA GGCACCCAAC AAGGAGGAGT TTCACAGAGA AACATGCCGC AAGATCAAAG
CACTCCACCA ATATGACTGC TTGAGAGCAA ATAAATCAAC ATTTGCTTGG GGTCTAGAAG CCCGAGTACC GTTTTTGGAC
AAGGCGTTTA TCGATGCTGC AATGAACATT GACCCCGAGT ATAAAATGAT AAAAAGAGAT GAAGGACGAA TTGAGAAGTG
GATTCTGAGG AGAGCCTTTG ATGATGAAGA ACATCCATAT CTGCCAAAGC ACATATTATA CAGGCAGAAA GAACAATTCA
GTGATGGAGT TGGGTATAGT TGGATTGATG GCCTCAAGGC TCATGCTGCA AAACATGTGA CTGACAGAAT GATGTTGAAT
GCTGGTAACA TCTACCCCCA CAACACCCCA ATAACGAAGG AAGCATACTA CTATAGAATG ATCTTTGAGA GGTTTTTCCC
TCAGAACTCA GCAAGGCTGA CTGTTCCTGG AGGAGCAAGT GTTGCATGCA GCACAGCGAA AGCTGTTGAG TGGGATGCTG
CTTGGTCTGG CAACCTTGAC CCTTCTGGTA GAGCAGCACT TGGAGTGCAC ATCTCAGCTT ATGACAAGCA GAACAATTTA
GCCAACAAAG GTGTAGAAAT TGAGAAGATT ATACCTATGG ATGCTGCTCC TCTTGGAGTT ACCATCCAGG GCTAG

>Vigan.03G126400.01
MCGILAVLGC SDDSRAKRVR VLELSRRLKH RGPDWSGLHQ HGDCFLAHQR LAIVDPASGD QPLFNEDKSV IVTVNGEIYN
HEELRRQLPN HQFRTGSDCD VIAHLYEEHG EDFVDMLDGI FSFVLLDTRD NSFIVARDAI GVTSLYIGWG LDGSVWISSE
MKGLNDDCEH FECFPPGHLY SSKERGFRRW YNPPWFSEAI PSAPYDPLAL RRAFEQAVIK RLMTDVPFGV LLSGGLDSSL
VASITSRYLA NTKAAEQWGS KLHSFCVGLE GSPDLKAAKE VADYLGTVHH EFHFTVQDGI DAIEDVIYHI ETYDVTTIRA
STPMFLMSRK IKSLGVKWVI TGEGSDEIFG GYLYFHKAPN KEEFHRETCR KIKALHQYDC LRANKSTFAW GLEARVPFLD
KAFIDAAMNI DPEYKMIKRD EGRIEKWILR RAFDDEEHPY LPKHILYRQK EQFSDGVGYS WIDGLKAHAA KHVTDRMMLN
AGNIYPHNTP ITKEAYYYRM IFERFFPQNS ARLTVPGGAS VACSTAKAVE WDAAWSGNLD PSGRAALGVH ISAYDKQNNL
ANKGVEIEKI IPMDAAPLGV TIQG*