VIGGS:GBrowse

Vigan.03G129700.01

Basic Information:

Name:	Vigan.03G129700.01 Multiple alignment Variant Information
Position:	Chr03:14565857..14567523 (- strand)
Length:	1667

Functional Information:

Description:	Similar to Uncharacterized protein. [V7BBH8, Phaseolus vulgaris]
GO:	Biological Process: negative regulation of transcription, DNA-dependent (GO:0045892)
	Molecular Function: FMN binding (GO:0010181)
	Molecular Function: oxidoreductase activity (GO:0016491)
InterPro:	NADPH-dependent FMN reductase-like (IPR005025)
	Flavodoxin/nitric oxide synthase (IPR008254)
	Flavoprotein WrbA (IPR010089)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:7.89,0.78,15.95,25.75,12.69,14.27,9.28,6.69
Arabidopsis thaliana homolog:	AT5G58800.1

Automatic updates:

Name:	BT099253 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-16L16 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:14565857..14566029 (- strand)
Length:	173
Type:	three_prime_UTR

Position:	Chr03:14566030..14566255 (- strand)
Length:	226
Type:	CDS

Position:	Chr03:14566554..14566819 (- strand)
Length:	266
Type:	CDS

Position:	Chr03:14567023..14567116 (- strand)
Length:	94
Type:	CDS

Position:	Chr03:14567246..14567271 (- strand)
Length:	26
Type:	CDS

Position:	Chr03:14567272..14567523 (- strand)
Length:	252
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G129700.01
TTTCAATACA CGCCTCTCTG TTCCATCATC TCAATTCAAT TCATAGGTTT CTGTGGCTTG TACTGTCCAT ACCATAACCT
TGCCTAAATT TTTTGTAGAT AATGAATTTC AGATGATTTC ATCTTTCTAT TCTTCTTTCT TCTGAAATAA TCACACCTTG
GAATTCCATT GCTCAATTTG CTAGTTGTTT ATCCCTTTAT CCTGGAGCAC ACCCCATTTT TCTAAAGCTG ATCAAACGCT
AACAGATAAA AAATGGCTGT CACTAAGGTC TACATTGTGT ATTACTCTTT GTATGGACAT GTGGACACCA TGGCAAGAGA
AGTGCTAAGA GGGGCTTCTG CAGTTGAAGG TGTTGAAGCA ACACTCTGGC GGGTACCTGA GATGCTTTCT GACCTAATAT
TGGAAAAGTT GAAAGCCCCT TCTAAACCAA ATGATGTACC AGACATAAGG CCAGAACAAC TTGTAGAGGC TGATGGTTTG
ATATTTGGTT TTCCTTCTCG TTTTGGCATG ATGCCAAGCC AGCTCAAGGC CTTCTTTGAT GCCACTGGTG GGTTATGGGC
ATCTCAAGCA CTGGCTGGCA AACCTGCTGG AATCTTCTGG AGTACTGGTT TTTATGGTGG AGGCCAAGAA CTGTCAGCAT
TGACAGCAAT AACTCAATTA GCTCATCATG GTATGCTTTT TGTTCCTCTT GGATATACTT TTGGAAGAGG CATGTTTGAG
ATGGATGAAG TTAAAGGAGG CTCTGCTTTT GGGGCTGGAA CTTTTGCAGG AGATGGATCT CGTCAACCTA CTGAACTAGA
ACTGCAGCAG GCCTTTTACC AGGGTAAATA CATTGCTGAA GTAACGAAAA AGCTAAAAGG CTAACCTCTC TGCCTAACAT
AAGATACTTT CAACTGTGAA GTTCTTATAA CTTTTATTGG ACAGGCTTGA GGTTACTTTT ACTGATGAAC AAGATACAAA
GGTCTCATGT TCCTTTTCTT TTTCTGGGTT ATGTGGCTGC AAGAATATAT ATCTTCTGAT GAAATAATAA GATATTT

[show][hide][copy]CDS

>Vigan.03G129700.01
ATGGCTGTCA CTAAGGTCTA CATTGTGTAT TACTCTTTGT ATGGACATGT GGACACCATG GCAAGAGAAG TGCTAAGAGG
GGCTTCTGCA GTTGAAGGTG TTGAAGCAAC ACTCTGGCGG GTACCTGAGA TGCTTTCTGA CCTAATATTG GAAAAGTTGA
AAGCCCCTTC TAAACCAAAT GATGTACCAG ACATAAGGCC AGAACAACTT GTAGAGGCTG ATGGTTTGAT ATTTGGTTTT
CCTTCTCGTT TTGGCATGAT GCCAAGCCAG CTCAAGGCCT TCTTTGATGC CACTGGTGGG TTATGGGCAT CTCAAGCACT
GGCTGGCAAA CCTGCTGGAA TCTTCTGGAG TACTGGTTTT TATGGTGGAG GCCAAGAACT GTCAGCATTG ACAGCAATAA
CTCAATTAGC TCATCATGGT ATGCTTTTTG TTCCTCTTGG ATATACTTTT GGAAGAGGCA TGTTTGAGAT GGATGAAGTT
AAAGGAGGCT CTGCTTTTGG GGCTGGAACT TTTGCAGGAG ATGGATCTCG TCAACCTACT GAACTAGAAC TGCAGCAGGC
CTTTTACCAG GGTAAATACA TTGCTGAAGT AACGAAAAAG CTAAAAGGCT AA

[show][hide][copy]PROTEIN

>Vigan.03G129700.01
MAVTKVYIVY YSLYGHVDTM AREVLRGASA VEGVEATLWR VPEMLSDLIL EKLKAPSKPN DVPDIRPEQL VEADGLIFGF
PSRFGMMPSQ LKAFFDATGG LWASQALAGK PAGIFWSTGF YGGGQELSAL TAITQLAHHG MLFVPLGYTF GRGMFEMDEV
KGGSAFGAGT FAGDGSRQPT ELELQQAFYQ GKYIAEVTKK LKG*