GBrowse Details

Vigan.03G131400.01

Basic Information:
Name: Vigan.03G131400.01
Multiple alignment
Variant Information
Position: Chr03:14852056..14854317 (+ strand)
Length: 2262
Functional Information:
Description: Similar to acyl-coenzyme A thioesterase 13-like. [XP_004490572.1, Cicer arietinum]
InterPro: Thioesterase superfamily (IPR006683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.06,0.17,0.00,0.00,0.00,0.18,0.08,0.00
Arabidopsis thaliana homolog: AT2G29590.1
Automatic updates:
Name: NM_001250140 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305814 (LOC100305814), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:14852056..14852209 (+ strand)
Length: 154
Type: five_prime_UTR
Position: Chr03:14852210..14852404 (+ strand)
Length: 195
Type: CDS
Position: Chr03:14852541..14852681 (+ strand)
Length: 141
Type: CDS
Position: Chr03:14853868..14854011 (+ strand)
Length: 144
Type: CDS
Position: Chr03:14854012..14854317 (+ strand)
Length: 306
Type: three_prime_UTR


>Vigan.03G131400.01
AATCAACATA AATTTGGAGG TTCGGTAAGA AAACAATGGC TGCAGGAAGA AACCCCTTTC GGCCTTTTAA GTCAATTAAG
CCATGTATTG AAGATCCAGA TAGCAACCAA AACAGGTAGA GAGGAACAAA TTTGTGGGCG GAGCAACGCA AAGAATGGAG
AAAGCAAAAG AGATGCTAAG CCTGACGCAA GAACAGTACG ACGCCGTGTC ACGACTCCAA TTTCTTCCTC CTGTCAGAAC
CGGCGATAAC TCCTCCTTCT ACGAACACTT CGTCCTCGCC GGAATCCGAG TTGACCGAGT TGAACCCGGT TGCGTCTCGT
GCTCCTTCAA AGTCCCTTCT CGTCTCGCCG ACAGGAGTGG GAAGTTGGCG AATGGAGCAA TTGCGAATTT GGTGGACGAA
GTTGGAGGCG CTGTCATCCA TGAAGAGGGT CTCCCCATGA ATGTTTCCGT CGACATGTCC ATTTCTTTTC TCTCAACTGC
TCGCGTTGGC GATGAACTAG AAATTACTTC TAGGTTGTTA GGAAGGAAAG GAGGTTATTC TGGGACAATT GTTCTCCTTA
AAAACAAAGC CACGGGAGAA TTGATAGCCG AAGGTCGTCA TTCACTATTT GGTAGACATA ACAGCAAAAT GTAATTCAAT
AGATGTGTAT GAAATGTCTG TAAATGAAGA TTGTCTTTGG GAAACTGACT TGAGTATGAG TCATCACTTA TTAATTAGAT
AAAGTTCTGA GTGAGAGCAT GATATGAAGA CGTGCAATTA AAAGTGAAAA AAATCATGCT TGGTTTATAT GGTTACTGTG
ACAGTACTTC TCCTATAACT GTAACTCCTT ATTTGTTGTG GGGTTTGAGA TTCACAGATT TGGAATAATT TTATGAATGA
GCTTATAATC TCTATAAGTG AAAAAAAGAG TAAAGCCTAG TGAATTACTA ATTCCACTTA 

>Vigan.03G131400.01
ATGGAGAAAG CAAAAGAGAT GCTAAGCCTG ACGCAAGAAC AGTACGACGC CGTGTCACGA CTCCAATTTC TTCCTCCTGT
CAGAACCGGC GATAACTCCT CCTTCTACGA ACACTTCGTC CTCGCCGGAA TCCGAGTTGA CCGAGTTGAA CCCGGTTGCG
TCTCGTGCTC CTTCAAAGTC CCTTCTCGTC TCGCCGACAG GAGTGGGAAG TTGGCGAATG GAGCAATTGC GAATTTGGTG
GACGAAGTTG GAGGCGCTGT CATCCATGAA GAGGGTCTCC CCATGAATGT TTCCGTCGAC ATGTCCATTT CTTTTCTCTC
AACTGCTCGC GTTGGCGATG AACTAGAAAT TACTTCTAGG TTGTTAGGAA GGAAAGGAGG TTATTCTGGG ACAATTGTTC
TCCTTAAAAA CAAAGCCACG GGAGAATTGA TAGCCGAAGG TCGTCATTCA CTATTTGGTA GACATAACAG CAAAATGTAA


>Vigan.03G131400.01
MEKAKEMLSL TQEQYDAVSR LQFLPPVRTG DNSSFYEHFV LAGIRVDRVE PGCVSCSFKV PSRLADRSGK LANGAIANLV
DEVGGAVIHE EGLPMNVSVD MSISFLSTAR VGDELEITSR LLGRKGGYSG TIVLLKNKAT GELIAEGRHS LFGRHNSKM*