VIGGS:GBrowse

Vigan.03G142400.01

Basic Information:

Name:	Vigan.03G142400.01 Multiple alignment Variant Information
Position:	Chr03:16899413..16901020 (- strand)
Length:	1608

Functional Information:

Description:	Similar to Hydroxyproline-rich glycoprotein family protein. [XP_007047692.1, Theobroma cacao]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.11,7.94,8.09,7.95,3.50,9.72,31.47

Automatic updates:

Name:	NM_001250462 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527787 (LOC100527787), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:16899413..16899878 (- strand)
Length:	466
Type:	three_prime_UTR

Position:	Chr03:16899879..16900040 (- strand)
Length:	162
Type:	CDS

Position:	Chr03:16900524..16900757 (- strand)
Length:	234
Type:	CDS

Position:	Chr03:16900758..16901020 (- strand)
Length:	263
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G142400.01
AGAACACGAG AATTTCTATC TCTTTCCATA AACAGAAGTG TAGAATGAAA AGTGTGAGCA CTCACATGAA GCTCAATAAT
AAACATGTCA CTCTCCACAG TTCTCCCACT AACAACTACA CCCCACCACC ATCAACTACC TAACCTAAAG CAAAGTTGCT
TCACTTCACT TCTTTTCTTA TTTAACCTAA ACATTCTCTT CTTTTTCACT CATTCACATT CTACATGAGA AGAGAGACAC
CAACACTATA CTAGACTGCA AAAATGGAGC TTCAGGACAC TGCTGCAACT CGTGTCTCAA TTGGATTTCC TCTCGGATTA
GCCCTTCTCT TTGTCTGTTT ACTCTTCATT TGTGGTTTTT TCTGCTGCTG CTTGCATTGG ACTAAGCTTC AATCTTTCCT
TCACTCTCAT GGGATCATCA ATACTCAATC TTTGCAACAG ACTCAAATGC AATCAGAGTT AGCTTCCCCC TTCCACAAAC
CAGCTTTTCC TGTTGTGATG ATGAAGCAGA ATTATGCAGA GAGTTTGCCT GTGCTGATGC CAGGGGATGC TGTTCCAAAA
TTCATTGCCA CAGCATGCCC TTGTCAACCT CCAAGAGATG AAAGGATCAC AATCCATGTG CAGAAGGAAC CATCCACTGA
ATTTTGCAGT GGCAACTGAT ACAGTTTCTG GTTTCAACTT TCAAGACAAA GCCTTGAACA ATTTAGGTGG AATATATATA
TATATATATA TAAATAAGAA TATATATATA TATATATATA AATATATGTT GGAACTTCTC ACACAGGCTA AAACTCTTTG
ATATAGCTTT GTGAGGAGTG AGATGTTGGA ACAAGCATGC AAGAAGGTGC CATGAAATTA TTTGATAACT TTGTGCTGAG
TGAGGTGATA CTGATACACC ATGAAGACTG AAGGTGCTGT AAGATAAAGA GTCTCAAACC CATTTGATTT TTTTTTTTGT
CAGAATGGGA AGAAAAGGGA TGAATCATCA ACCTGTCTCT TTTTCTTTAA CAAAAAAAAG CTGATTGAAG GATGCTTTTT
TTTTTCCTAC TCTTTTCAAG TTCAAACTAA AGTTTTGAAT TTGGAGTTTA TTGGAAGTAT AATATGTGTT TTTATGAGTT
TCTAA

[show][hide][copy]CDS

>Vigan.03G142400.01
ATGGAGCTTC AGGACACTGC TGCAACTCGT GTCTCAATTG GATTTCCTCT CGGATTAGCC CTTCTCTTTG TCTGTTTACT
CTTCATTTGT GGTTTTTTCT GCTGCTGCTT GCATTGGACT AAGCTTCAAT CTTTCCTTCA CTCTCATGGG ATCATCAATA
CTCAATCTTT GCAACAGACT CAAATGCAAT CAGAGTTAGC TTCCCCCTTC CACAAACCAG CTTTTCCTGT TGTGATGATG
AAGCAGAATT ATGCAGAGAG TTTGCCTGTG CTGATGCCAG GGGATGCTGT TCCAAAATTC ATTGCCACAG CATGCCCTTG
TCAACCTCCA AGAGATGAAA GGATCACAAT CCATGTGCAG AAGGAACCAT CCACTGAATT TTGCAGTGGC AACTGA

[show][hide][copy]PROTEIN

>Vigan.03G142400.01
MELQDTAATR VSIGFPLGLA LLFVCLLFIC GFFCCCLHWT KLQSFLHSHG IINTQSLQQT QMQSELASPF HKPAFPVVMM
KQNYAESLPV LMPGDAVPKF IATACPCQPP RDERITIHVQ KEPSTEFCSG N*