GBrowse Details

Vigan.03G147200.01

Basic Information:
Name: Vigan.03G147200.01
Multiple alignment
Variant Information
Position: Chr03:17986755..18002831 (+ strand)
Length: 16077
Functional Information:
Description: Similar to XIAP-associated factor 1-like isoform X2. [XP_004501054.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: TRAF-like (IPR008974)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.65,6.71,11.23,8.64,14.53,12.56,19.55,9.09
Arabidopsis thaliana homolog: AT1G09920.1
Automatic updates:
Name: NM_001255312 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100811867 (LOC100811867), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349611 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527695 (LOC100527695), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:17986755..17987015 (+ strand)
Length: 261
Type: five_prime_UTR
Position: Chr03:17987016..17987059 (+ strand)
Length: 44
Type: CDS
Position: Chr03:17987228..17987363 (+ strand)
Length: 136
Type: CDS
Position: Chr03:17989225..17989362 (+ strand)
Length: 138
Type: CDS
Position: Chr03:17989442..17989566 (+ strand)
Length: 125
Type: CDS
Position: Chr03:18002391..18002550 (+ strand)
Length: 160
Type: CDS
Position: Chr03:18002551..18002831 (+ strand)
Length: 281
Type: three_prime_UTR


>Vigan.03G147200.01
GTTTCTCGCA TGAATGGGGC GTACCATAAT CATACCGCAA TGCTGTATCT ACCATTTCAT TTGTGACTTA AAGTCTTGAA
TCATCCCAAA GCCCCCAAAA AGTTATCCCA ACCAAAAGTC CATTCAGATA TCGGAATCTA AGATCTACCA AACCTTGTTT
AGTCAGAATC TAAAATTCTC CGAAACCTAT TTCTCCCAAT ACTCGTATAA TCCGAATCTC CATCTCTTTC TTCTTTCTCC
AGATTGTTTC AGTTTTCGGC TATGGAAGCT GTTCCGGATC AAGACACTAG TATATGCACT CACTGTGATC GGGCTGTACC
TGTTGCAAAT ATTGACTTGC ATTATGCTCA TTGCTCTCGG AAACTTGAAA AATGCAAAAT CTGTGGTGAT ATGGTTCCTA
GAAAAAACCT GGAGGATCAT TATTTAAACA CACATGCACC GGTTTCTTGT TCATTATGCA GTGAGACAAT GGAGCGTGAT
ATTTTAGATA TCCATAAAGG TGAAGAATGC CCTCAAAGGA TTGTCACTTG TGAGTTCTGT GAGTTTCCAT TGCCAGCAAT
TGATCTGGCT GAGCATCAGG AAGTATGTGG GAATCGAACA GAACTTTGTC ACATATGTAA CAAATATGTT AGACTTCGTG
AAAGATTCAG CCATGAAGGT CGGTGCAATG GCATTATCCA AGATACTTCT GTGGGCTCTT CAAGGAATGT GAGGGAAACC
GAGGGAGATC AAGGTGCTAG AAGAAGGCCG CAGAATGACT TCTCAACTAA ACGCCTTCTT TTCACTATAG CCATCACTGG
TATTGCTGTC ATACTGGGAT CTTTTTTTCT ACAGAGGAAG GCAGAGCCCA GTGATGTGCA TTAGCAACGA AACCAAAACC
TTTTAGGATT CTGCCTTTTC TGTACAATTC ATTCCCCTGC ATCAGAAGCC GTCTCATATA TACTTTTGCT AATGTAGTAG
AAGTGAAGAA CACATCGGCA TTGTCATTAT AGAAAATATA TGTAGTTACA TGCTTCTTTT GTTGACAATA TTTCAGTATT
TCAGGAGATT TTCTGTTCCT TTTCATTCAT TCTGATGGTA ATTTCTAGAA ATGGAACGCT CTGCTAAGAA TTCTGTTGAA
GAATCTTGAC CATGTGTTAT TTTTT

>Vigan.03G147200.01
ATGGAAGCTG TTCCGGATCA AGACACTAGT ATATGCACTC ACTGTGATCG GGCTGTACCT GTTGCAAATA TTGACTTGCA
TTATGCTCAT TGCTCTCGGA AACTTGAAAA ATGCAAAATC TGTGGTGATA TGGTTCCTAG AAAAAACCTG GAGGATCATT
ATTTAAACAC ACATGCACCG GTTTCTTGTT CATTATGCAG TGAGACAATG GAGCGTGATA TTTTAGATAT CCATAAAGGT
GAAGAATGCC CTCAAAGGAT TGTCACTTGT GAGTTCTGTG AGTTTCCATT GCCAGCAATT GATCTGGCTG AGCATCAGGA
AGTATGTGGG AATCGAACAG AACTTTGTCA CATATGTAAC AAATATGTTA GACTTCGTGA AAGATTCAGC CATGAAGGTC
GGTGCAATGG CATTATCCAA GATACTTCTG TGGGCTCTTC AAGGAATGTG AGGGAAACCG AGGGAGATCA AGGTGCTAGA
AGAAGGCCGC AGAATGACTT CTCAACTAAA CGCCTTCTTT TCACTATAGC CATCACTGGT ATTGCTGTCA TACTGGGATC
TTTTTTTCTA CAGAGGAAGG CAGAGCCCAG TGATGTGCAT TAG

>Vigan.03G147200.01
MEAVPDQDTS ICTHCDRAVP VANIDLHYAH CSRKLEKCKI CGDMVPRKNL EDHYLNTHAP VSCSLCSETM ERDILDIHKG
EECPQRIVTC EFCEFPLPAI DLAEHQEVCG NRTELCHICN KYVRLRERFS HEGRCNGIIQ DTSVGSSRNV RETEGDQGAR
RRPQNDFSTK RLLFTIAITG IAVILGSFFL QRKAEPSDVH *