GBrowse Details

Vigan.03G172300.01

Basic Information:
Name: Vigan.03G172300.01
Multiple alignment
Variant Information
Position: Chr03:25309455..25315500 (+ strand)
Length: 6046
Functional Information:
Description: Similar to Cryptochrome1. [D0FZ16, Glycine max]
GO: Biological Process: DNA repair (GO:0006281)
Molecular Function: DNA photolyase activity (GO:0003913)
InterPro: Cryptochrome/DNA photolyase, class 1 (IPR002081)
DNA photolyase, FAD-binding/Cryptochrome, C-terminal (IPR005101)
DNA photolyase, N-terminal (IPR006050)
Cryptochrome, plant (IPR014134)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (IPR018394)
Cryptochrome C-terminal (IPR020978)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.67,0.60,12.08,62.04,3.66,8.39,1.39,33.40
Arabidopsis thaliana homolog: AT1G04400.2, AT4G08920.1
Automatic updates:
Name: NM_001253926 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cryptochrome-1-like (LOC100786551), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255223 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cryptochrome-1-like (LOC100815428), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:25309455..25310432 (+ strand)
Length: 978
Type: five_prime_UTR
Position: Chr03:25310433..25310745 (+ strand)
Length: 313
Type: CDS
Position: Chr03:25311244..25311462 (+ strand)
Length: 219
Type: CDS
Position: Chr03:25312225..25312931 (+ strand)
Length: 707
Type: CDS
Position: Chr03:25313658..25314470 (+ strand)
Length: 813
Type: CDS
Position: Chr03:25314471..25315500 (+ strand)
Length: 1030
Type: three_prime_UTR


>Vigan.03G172300.01
CGTATCACCA TTGACTTTCA GAAAGAAAAA AACATCTACG TATGGTGGAA GAGTTTGACA ATTCCTTCTT AGTTTTGTTC
TACATTTGCA AGTCTACTAT GATACAAATG AATCTTGTTC AGTGGGTGAG TTCAGGAAAA AGGTAACGTA GTTTGAGAGT
GGTGGCATGA TGAAAGGGTT GGTGGGGTTG TGAGCAGAGA GAGTCACGAG ATAGAAAATG TAACGTAAGT ACGCTGAAAA
AAAGTTCGTA AATTTTGAAG AGGGCATGAG ATGAGGCAGT TATAGGCACA AGCACTGTGT ATCTGTATCC ATCATTTTCT
GATTCCGCGT CATGTCACTT GGATGGAAAT AGAAGAAACT AGAGACGTAG ATGTGATTTG TTTTTGTTGC ATAGGATAAT
AGAAATACGA AAATCTACGT GACATAAAAA AGGTGTGGTT GCGGTTTGCC TATCAATTCA TTGTATCCCC ACAACGTTGG
CCAATCCTCT TCACTTGTTC TTCCTCACAT CCCATCTCTC TTTCTCTCTC TACTTGGACC CCGTCCTCAG TGTCTCTTCT
CTCTGGTTGC AACTTGGGTG TGAAAGGACC AAAATACGAA TTTTCTGGAA AAAGAAATCA ATCCCTCTTC CCAGAAGAAA
TGCCAAAGTG TGGGAGAAAG GGGAATTAAA AGATAAGTGC CAAGCCTCAA AGTTGTCTAC CCAAATATCA GATTGTGCTT
TTTACCTTCT TATGGCCTAT AATCTCCCTC GGTAAAGAAA ACCAAGACCA AAAGGAATAA AAAAAAGTGG GAGAGAGAGA
GGGAGAAGTA GAGAACAGGA GAGAAAAAGA TAAGAATAGT AAGCTAGCAT TTTTTGGTGT TGTTGTTAAG TCTCAGTACT
CAAAGGGAAA GGATTAAGGA AAGAGATCTG GTATATGGTT GTGTGTGTGA ATAATAGAGT GCTTGAGGTT GTGGTGTTGG
TGAAGAATAT TTCTGAAGAT GTCAGGAGGA GGATGCAGCA TAGTGTGGTT TAGGAGAGAT CTAAGGGTAG AGGATAATCC
TGCACTGGCT GCAGGAGTTA GAGCAGGAGC TGTTGTTGCT GTTTTCATAT GGGCTCCAGA AGAAGAGGGT CAATACTACC
CTGGGAGGGT CTCTAGGTGG TGGCTCAAAC AAAGTTTGGC TCACCTTGAT TCCTCTTTGA GAAGCCTTGG CACTCCCCTT
ATCACCAAGC GTTCCACTAA TAGTGTTTCT TCCCTATTGG AGGTCGTTAA GTCCACTGGG GCTACTCAAC TCTTTTTCAA
CCATTTATAT GATCCATTGT CACTTGTGAG GGATCACCGA GCAAAGGAGG TTCTGACTGC ACAAGGCATT ACCGTCCGTT
CATTCAACTC AGACTTATTG TATGAACCAT GGGATGTGAA TGACGCTCAT GGCCAACCAT TCACAACTTT TTCTGCTTTT
TGGGAAAGAT GCCTCAGCAT GCCTTATGAC CCACAAGCAC CTCTTCTCCC ACCTAAAAGA ATTATTCCAG GTGATGCTTC
AAGGTGCCCT TGTGATATGT TGGTGTTTGA AGACGATTTA GAGAAGGCAA GCAATGCGCT TCTTTCTCGA GCATGGTCAC
CGGGGTGGAG CAATGCTGAC AAGGCATTGA CGGCATTCAT AAACGGTCCT CTGATTGAAT ACTCAAAGAA TCGTAGGAAG
GCTGATAGTG CCACAACCTC ATTTCTCTCT CCACATTTGC ATTTTGGTGA GGTGAGTGTA AAGAAAGTGT TCCATCTTGT
CCGCATTAAG CAAGTGTTTT GGGCCAATGA AGGAAACAAG GCTGGTGAAG AGAGTGTGAA CTTGTTTCTC AAGTCTATTG
GTCTTAGAGA GTATTCAAGG TACATCAGTT TCAACCACCC CTACAGTCAT GAGAGGCCCC TTCTAGGACA CCTTAAGTTT
TTCCCTTGGG TGGTGAATGA AGGCTACTTC AAGGCTTGGA GACAAGGCAG AACAGGGTAC CCTTTGGTGG ATGCTGGAAT
GAGAGAGTTG TGGGCAACTG GTTGGTTGCA TGATCGGATA CGTGTTGTGG TTTCAAGTTT CTTTGTGAAG GTGCTTCAGC
TTCCTTGGAG ATGGGGAATG AAGTATTTCT GGGATACCCT TTTGGATGCA GATCTTGAGA GTGATGCTCT TGGTTGGCAG
TACATATCTG GTACTCTCCC TGATGGTCGC GAATTTGATC GAATAGATAA TCCACAGTTT GAGGGGTATA AGTGTGATCC
AAATGGAGAA TATGTTCGAC GCTGGCTTCC TGAACTTGCT AGATTACCAA CTGAATGGAT ACACCATCCG TGGAATGCAC
CAGAGTATGT ACTACAAGCT GCTGGAATTG AACTTGGTTC AAATTATCCT CTTCCCATTG TAGGAATAGA TGCTGCAAAA
GTTAGACTGC AAGAAGCACT TATACAAATG TGGCAACAAG AAGCAGCTTC AAGAGCTGCA ATTGAAAATG GAACGGAGGA
AGGGCTTGGA GACTCATCTG AATCAGCCCC TATTGCTTTT CCTCAAGACA CACACATGGA AGAAAGACTT GCTGAACCTG
TTAGGAACAA CCCACCTCAT GGTACTCGGC GCTACGAGGA TCAGATGGTC CCAAGTATGA CTGCTTCCCA TGTGAGAGTG
GAAGAGGAAG AAACATCTTC AGACCTTCGA AACTCAGCAG CAGACAACAG AGCCGAAGTT CCTACAAATG TGACCACACA
AGAAAATGCC AGAGAGACAG TGAATCAAGG AGGGCTGCTG AATGTAAATA GAAACACTCG AGTACAGAAT AATGCTACTG
AAATGTGGCT GAGAAATGCG GCTGAAGATT CCACAGCAGA ATCGTCAAGT AGTACTAGGA GAGAAAGGGA TGGGGGTGTA
GTTCCAGTTT GGTCTCCCCC AGCATCTAAC TTCTCAGAAC AATTTGTAGA TGATGAAAAT GGTATTGGAG CCAGTTCATC
ATACTTGCAG AGGCAGCATC CTCAGTCCCA TCAATTGATG AACTGGACGC GGCTACCTCA GACTGGGTGA GATTTCCCAA
AGCAAGTGAA AAGATAAATA CATATGTGTG TTCCGTGCTT CATGATAAAC TTTTTCATTT CAACTTTACA AGGTCATGTT
CTGCAACCAT TTGGTGATTT TGGAAATAGT GTGGCTAACC TGCTTGTGTG CTATTTTCTT AGCCTCACTT TTTTTGGGTT
TTTCACTCTT CAGATTCTCC TCTTCCCAAG TACAAGATAA GTTGTAGAAT TTTGCTACAT CTACAAACAC TTAGCGAATG
GCAATATTTT GGTCCTGTTT GATGATGTTT TTGGCAATGG ATTATCTGCA GTAACTTTAC CACATTAATT TTACCACTGC
ATGATATTCG AACGTTGAAA TAAATTTTTA GTATATAATC GATGTTTGAA AGAACAAATG GTGGATCATA ACACTTGACC
ATGTCTACTT TTTCTAACCG TTCCAATTGT TTCTGATCTA ATGTTATGAT ATTTTCATCT TGTTACAATT AACACTTTAA
TTACAGGTAA TTCAGAGCTA CAACGTGGTG ATTAGTATCA GGGAGATGAA GAATGCAGTC TCCCCTCATC TTTTGGGAAA
AGTGGGATGG CAAACCTGGT ATTGGACATA CATGTGATCA TTTCCTACAT CCTTGAACAT GTCTTGACAC ATGATTAACG
GCTGACCTCG AATGTGCATG AAAATTTCAG TTCATGCGGG CAGTAATTTC ATCTGCAGTG CCTTTTGCGC TCTTGTACAA
AATTTTTAGG CCTACTGTAT AGTATAATTT GTGTTGTGGA GGAGAAAGAG CCACTATTCG AATTGGACCT TTGGTCCTCT
CTTAAACTCA GGGTTGTGCT TATCATTTGA GGTAGTTAGT TATTTACGTT TCCTGTCCGG TAATCCTGTA CATTTATTTT
GACTGCTGTA AAGTGCATTA ATCTCGGTGC TCAGATCTCC AAAACTTCTC TATATGGCAA ACTAAAATGC ATTGCCAAGA
CACTTTTGGT TCTTGCTTTC CTGTCCTTGT ATTGCTTATT CCTTAAGTTT CCTATGGTTG 

>Vigan.03G172300.01
ATGTCAGGAG GAGGATGCAG CATAGTGTGG TTTAGGAGAG ATCTAAGGGT AGAGGATAAT CCTGCACTGG CTGCAGGAGT
TAGAGCAGGA GCTGTTGTTG CTGTTTTCAT ATGGGCTCCA GAAGAAGAGG GTCAATACTA CCCTGGGAGG GTCTCTAGGT
GGTGGCTCAA ACAAAGTTTG GCTCACCTTG ATTCCTCTTT GAGAAGCCTT GGCACTCCCC TTATCACCAA GCGTTCCACT
AATAGTGTTT CTTCCCTATT GGAGGTCGTT AAGTCCACTG GGGCTACTCA ACTCTTTTTC AACCATTTAT ATGATCCATT
GTCACTTGTG AGGGATCACC GAGCAAAGGA GGTTCTGACT GCACAAGGCA TTACCGTCCG TTCATTCAAC TCAGACTTAT
TGTATGAACC ATGGGATGTG AATGACGCTC ATGGCCAACC ATTCACAACT TTTTCTGCTT TTTGGGAAAG ATGCCTCAGC
ATGCCTTATG ACCCACAAGC ACCTCTTCTC CCACCTAAAA GAATTATTCC AGGTGATGCT TCAAGGTGCC CTTGTGATAT
GTTGGTGTTT GAAGACGATT TAGAGAAGGC AAGCAATGCG CTTCTTTCTC GAGCATGGTC ACCGGGGTGG AGCAATGCTG
ACAAGGCATT GACGGCATTC ATAAACGGTC CTCTGATTGA ATACTCAAAG AATCGTAGGA AGGCTGATAG TGCCACAACC
TCATTTCTCT CTCCACATTT GCATTTTGGT GAGGTGAGTG TAAAGAAAGT GTTCCATCTT GTCCGCATTA AGCAAGTGTT
TTGGGCCAAT GAAGGAAACA AGGCTGGTGA AGAGAGTGTG AACTTGTTTC TCAAGTCTAT TGGTCTTAGA GAGTATTCAA
GGTACATCAG TTTCAACCAC CCCTACAGTC ATGAGAGGCC CCTTCTAGGA CACCTTAAGT TTTTCCCTTG GGTGGTGAAT
GAAGGCTACT TCAAGGCTTG GAGACAAGGC AGAACAGGGT ACCCTTTGGT GGATGCTGGA ATGAGAGAGT TGTGGGCAAC
TGGTTGGTTG CATGATCGGA TACGTGTTGT GGTTTCAAGT TTCTTTGTGA AGGTGCTTCA GCTTCCTTGG AGATGGGGAA
TGAAGTATTT CTGGGATACC CTTTTGGATG CAGATCTTGA GAGTGATGCT CTTGGTTGGC AGTACATATC TGGTACTCTC
CCTGATGGTC GCGAATTTGA TCGAATAGAT AATCCACAGT TTGAGGGGTA TAAGTGTGAT CCAAATGGAG AATATGTTCG
ACGCTGGCTT CCTGAACTTG CTAGATTACC AACTGAATGG ATACACCATC CGTGGAATGC ACCAGAGTAT GTACTACAAG
CTGCTGGAAT TGAACTTGGT TCAAATTATC CTCTTCCCAT TGTAGGAATA GATGCTGCAA AAGTTAGACT GCAAGAAGCA
CTTATACAAA TGTGGCAACA AGAAGCAGCT TCAAGAGCTG CAATTGAAAA TGGAACGGAG GAAGGGCTTG GAGACTCATC
TGAATCAGCC CCTATTGCTT TTCCTCAAGA CACACACATG GAAGAAAGAC TTGCTGAACC TGTTAGGAAC AACCCACCTC
ATGGTACTCG GCGCTACGAG GATCAGATGG TCCCAAGTAT GACTGCTTCC CATGTGAGAG TGGAAGAGGA AGAAACATCT
TCAGACCTTC GAAACTCAGC AGCAGACAAC AGAGCCGAAG TTCCTACAAA TGTGACCACA CAAGAAAATG CCAGAGAGAC
AGTGAATCAA GGAGGGCTGC TGAATGTAAA TAGAAACACT CGAGTACAGA ATAATGCTAC TGAAATGTGG CTGAGAAATG
CGGCTGAAGA TTCCACAGCA GAATCGTCAA GTAGTACTAG GAGAGAAAGG GATGGGGGTG TAGTTCCAGT TTGGTCTCCC
CCAGCATCTA ACTTCTCAGA ACAATTTGTA GATGATGAAA ATGGTATTGG AGCCAGTTCA TCATACTTGC AGAGGCAGCA
TCCTCAGTCC CATCAATTGA TGAACTGGAC GCGGCTACCT CAGACTGGGT GA

>Vigan.03G172300.01
MSGGGCSIVW FRRDLRVEDN PALAAGVRAG AVVAVFIWAP EEEGQYYPGR VSRWWLKQSL AHLDSSLRSL GTPLITKRST
NSVSSLLEVV KSTGATQLFF NHLYDPLSLV RDHRAKEVLT AQGITVRSFN SDLLYEPWDV NDAHGQPFTT FSAFWERCLS
MPYDPQAPLL PPKRIIPGDA SRCPCDMLVF EDDLEKASNA LLSRAWSPGW SNADKALTAF INGPLIEYSK NRRKADSATT
SFLSPHLHFG EVSVKKVFHL VRIKQVFWAN EGNKAGEESV NLFLKSIGLR EYSRYISFNH PYSHERPLLG HLKFFPWVVN
EGYFKAWRQG RTGYPLVDAG MRELWATGWL HDRIRVVVSS FFVKVLQLPW RWGMKYFWDT LLDADLESDA LGWQYISGTL
PDGREFDRID NPQFEGYKCD PNGEYVRRWL PELARLPTEW IHHPWNAPEY VLQAAGIELG SNYPLPIVGI DAAKVRLQEA
LIQMWQQEAA SRAAIENGTE EGLGDSSESA PIAFPQDTHM EERLAEPVRN NPPHGTRRYE DQMVPSMTAS HVRVEEEETS
SDLRNSAADN RAEVPTNVTT QENARETVNQ GGLLNVNRNT RVQNNATEMW LRNAAEDSTA ESSSSTRRER DGGVVPVWSP
PASNFSEQFV DDENGIGASS SYLQRQHPQS HQLMNWTRLP QTG*