VIGGS:GBrowse

Vigan.03G175900.01

Basic Information:

Name:	Vigan.03G175900.01 Multiple alignment Variant Information
Position:	Chr03:26140093..26142424 (- strand)
Length:	2332

Functional Information:

Description:	Similar to Glucosyltransferase-10. [Q8S999, Phaseolus angularis]
GO:	Biological Process: metabolic process (GO:0008152)
GO:	Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758)
InterPro:	UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,1.43,6.61,0.68,0.06,3.90,0.06,2.45
Arabidopsis thaliana homolog:	AT1G22340.1, AT1G22360.1, AT1G22370.2, AT1G22380.1, AT1G22400.1, AT1G78270.1

Automatic updates:

Name:	NM_001329827 NCBI(nuccore)
Organism:	Vigna angularis
Description:	Vigna angularis 7-deoxyloganetin glucosyltransferase-like (LOC108337688), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:26140093..26140285 (- strand)
Length:	193
Type:	three_prime_UTR

Position:	Chr03:26140286..26141232 (- strand)
Length:	947
Type:	CDS

Position:	Chr03:26141887..26142397 (- strand)
Length:	511
Type:	CDS

Position:	Chr03:26142398..26142424 (- strand)
Length:	27
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G175900.01
GTTGTTCTGA AACAAATAGT GTAAGAAATG AGTTCCCCCG ACGCAAAAGA GAAACAGCAC GCCGTGTGTG TCCCATTCCC
AGCACAAGGC CACATAAACC CAATGCTGAA ACTAGCAAAA CTCCTTCACT TCAATGGCTT TTACATCACC TTTGTCAACA
CCCACTATAA CCACAAACGC CTTCTCAAAA GCCGAGGCCT GAACTCCCTC AACGGGCTTC CCTCGTTCCG CTTCGAAACC
ATCCCCGACG GGCTTCCCGA GCCCGAAGTT GAAGGCACAC ACCACGTGCC TTCGCTGTGC GACTCAACCA GCACCACTTG
CTTGCCTCAC TTCAGAAACC TCCTTTCCAA ACTGAACAAC GAATCCGGTG TCCCCGCCGT CTCTTGCATC ATTTCTGACG
GCGTCATGAG CTTCACTCTG GATGCTTCTC AGGAATTAGG TCTGCCAAAC GTGTTGTTTT GGACCAGTAG CGCATGCGGG
TTCATGTGCT ACGTACATTA CCATCAACTT ATTCAACGGG GAATTGTGCC ATTCAAAGAT GCGAGTGATC TCACAAACGG
ATATCTGGAT ACTACAATCG ATTGGGTGGC AGGCATTAAA GAGATTCGAT TGAAGGATAT TCCGTCCTTC ATTAGAACAA
CAGATCCAGA AGATATTATG CTTAATTTCG CTCGTGACGA GTGCATAAGA GCTGAAAAAG CTTCTGCAAT AATTTTGAAC
ACGTTTGATG CCTTAGAGCA CGATGTTTTG GAAGCATTCT CATCCATTCT GCCTCCTGTG TATTCCATTG GTCCCTTAAG
TTTTCTGTTA AACAATGTCA CTGATAAGAG GTTGAACGCA ATAGGGTCCA ACCTATGGAG GGAGGAACCA GGGTGTCTGG
AATGGCTTGA TACTAAAGAA GCCAACACAG TGGTTTATGT GAACTTTGGA AGCGTGACAG TTATGACAAA TGAGCAAATG
ATTGAGTTTG CATGGGGACT GGCAAACAGC AAAAAAAGCT TTGTGTGGGT TATAAGACCA GATCTTGTGG TTGGTGAAAG
AGCTGTTCTA CCTCAAGAGT TTGTGACACA AACTAAGAAC AGAGGCATGT TATCTGGTTG GTGTCCCCAA GAGCAAGTGT
TGGGTCACCC AGCAATTGGA GTGTTCTTGA CTCATAGCGG TTGGAACTCA ACGTTGGAAA GTTTGTGTGC AGGTGTTCCA
ATGATATGTT GGCCTTTCTT TGCGGAGCAA CAAACAAATT GTAGGTTTTG TTGCAAGGAA TGGGGGATTG GGGTGGAGAT
TGAAGATGTT GAGAGGGACC ACATTGAGAG GCTTGTCAGG GCGATGATGG ACGGTGAAAA GGGTAAAGAC ATGAAAAGGA
AAGCTGTAAA TTGGAAAATA TTGGCCGAAA AGGCTGCTTC TGGCCCCACT GGTTCTTCGT TTGTCCAGTT TCAGAAATTG
ATCCGTGAAG TTCTTAAGGG CAGAAATGGT ATGACAATTA TTTAGAAAAA GGTGATGATG GGGAAATATG TATCGATTAT
GAAAATGAAT TCCTTATGTT TAGGTTTCCA TTTGGGTGAT GATGGGTGAT ATGTCCCTCT AAAATTTCGT TTATTTGTTT
CCAAATAAAG CCAGTTTGAG TATATTAGCG CATTCCAACT TCAACTTTAT ATTTGTTTCA ACGAACATGA ATTTTTTA

[show][hide][copy]CDS

>Vigan.03G175900.01
ATGAGTTCCC CCGACGCAAA AGAGAAACAG CACGCCGTGT GTGTCCCATT CCCAGCACAA GGCCACATAA ACCCAATGCT
GAAACTAGCA AAACTCCTTC ACTTCAATGG CTTTTACATC ACCTTTGTCA ACACCCACTA TAACCACAAA CGCCTTCTCA
AAAGCCGAGG CCTGAACTCC CTCAACGGGC TTCCCTCGTT CCGCTTCGAA ACCATCCCCG ACGGGCTTCC CGAGCCCGAA
GTTGAAGGCA CACACCACGT GCCTTCGCTG TGCGACTCAA CCAGCACCAC TTGCTTGCCT CACTTCAGAA ACCTCCTTTC
CAAACTGAAC AACGAATCCG GTGTCCCCGC CGTCTCTTGC ATCATTTCTG ACGGCGTCAT GAGCTTCACT CTGGATGCTT
CTCAGGAATT AGGTCTGCCA AACGTGTTGT TTTGGACCAG TAGCGCATGC GGGTTCATGT GCTACGTACA TTACCATCAA
CTTATTCAAC GGGGAATTGT GCCATTCAAA GATGCGAGTG ATCTCACAAA CGGATATCTG GATACTACAA TCGATTGGGT
GGCAGGCATT AAAGAGATTC GATTGAAGGA TATTCCGTCC TTCATTAGAA CAACAGATCC AGAAGATATT ATGCTTAATT
TCGCTCGTGA CGAGTGCATA AGAGCTGAAA AAGCTTCTGC AATAATTTTG AACACGTTTG ATGCCTTAGA GCACGATGTT
TTGGAAGCAT TCTCATCCAT TCTGCCTCCT GTGTATTCCA TTGGTCCCTT AAGTTTTCTG TTAAACAATG TCACTGATAA
GAGGTTGAAC GCAATAGGGT CCAACCTATG GAGGGAGGAA CCAGGGTGTC TGGAATGGCT TGATACTAAA GAAGCCAACA
CAGTGGTTTA TGTGAACTTT GGAAGCGTGA CAGTTATGAC AAATGAGCAA ATGATTGAGT TTGCATGGGG ACTGGCAAAC
AGCAAAAAAA GCTTTGTGTG GGTTATAAGA CCAGATCTTG TGGTTGGTGA AAGAGCTGTT CTACCTCAAG AGTTTGTGAC
ACAAACTAAG AACAGAGGCA TGTTATCTGG TTGGTGTCCC CAAGAGCAAG TGTTGGGTCA CCCAGCAATT GGAGTGTTCT
TGACTCATAG CGGTTGGAAC TCAACGTTGG AAAGTTTGTG TGCAGGTGTT CCAATGATAT GTTGGCCTTT CTTTGCGGAG
CAACAAACAA ATTGTAGGTT TTGTTGCAAG GAATGGGGGA TTGGGGTGGA GATTGAAGAT GTTGAGAGGG ACCACATTGA
GAGGCTTGTC AGGGCGATGA TGGACGGTGA AAAGGGTAAA GACATGAAAA GGAAAGCTGT AAATTGGAAA ATATTGGCCG
AAAAGGCTGC TTCTGGCCCC ACTGGTTCTT CGTTTGTCCA GTTTCAGAAA TTGATCCGTG AAGTTCTTAA GGGCAGAAAT
GGTATGACAA TTATTTAG

[show][hide][copy]PROTEIN

>Vigan.03G175900.01
MSSPDAKEKQ HAVCVPFPAQ GHINPMLKLA KLLHFNGFYI TFVNTHYNHK RLLKSRGLNS LNGLPSFRFE TIPDGLPEPE
VEGTHHVPSL CDSTSTTCLP HFRNLLSKLN NESGVPAVSC IISDGVMSFT LDASQELGLP NVLFWTSSAC GFMCYVHYHQ
LIQRGIVPFK DASDLTNGYL DTTIDWVAGI KEIRLKDIPS FIRTTDPEDI MLNFARDECI RAEKASAIIL NTFDALEHDV
LEAFSSILPP VYSIGPLSFL LNNVTDKRLN AIGSNLWREE PGCLEWLDTK EANTVVYVNF GSVTVMTNEQ MIEFAWGLAN
SKKSFVWVIR PDLVVGERAV LPQEFVTQTK NRGMLSGWCP QEQVLGHPAI GVFLTHSGWN STLESLCAGV PMICWPFFAE
QQTNCRFCCK EWGIGVEIED VERDHIERLV RAMMDGEKGK DMKRKAVNWK ILAEKAASGP TGSSFVQFQK LIREVLKGRN
GMTII*