GBrowse Details

Vigan.03G178000.01

Basic Information:
Name: Vigan.03G178000.01
Multiple alignment
Variant Information
Position: Chr03:26616422..26621880 (+ strand)
Length: 5459
Functional Information:
Description: Similar to Uncharacterized protein. [I1MAW4, Glycine max]
GO: Cellular Component: mitochondrion (GO:0005739)
Molecular Function: cytochrome-c oxidase activity (GO:0004129)
InterPro: Cytochrome c oxidase, subunit VIb (IPR003213)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:156.71,115.48,117.71,50.81,227.49,103.25,126.49,65.12
Arabidopsis thaliana homolog: AT1G22450.1
Automatic updates:
Name: NM_001249391 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative cytochrome c oxidase subunit 6b-1 (LOC100306272), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:26616422..26616589 (+ strand)
Length: 168
Type: five_prime_UTR
Position: Chr03:26616590..26616631 (+ strand)
Length: 42
Type: CDS
Position: Chr03:26617758..26618030 (+ strand)
Length: 273
Type: CDS
Position: Chr03:26618132..26618214 (+ strand)
Length: 83
Type: CDS
Position: Chr03:26618312..26618393 (+ strand)
Length: 82
Type: CDS
Position: Chr03:26621402..26621455 (+ strand)
Length: 54
Type: CDS
Position: Chr03:26621456..26621880 (+ strand)
Length: 425
Type: three_prime_UTR


>Vigan.03G178000.01
TTTTTTAACT AATTTTTTTT TTCCTGACTT TTCCGAATAT TTTAACCATA AAACCTTATA CAAACACGAA CACGAACACG
AACACGATCT CAATCTGTTT AAGCTTTTCG AGTTTTGACC TACAACACTC GAATCCTCTC TTGTGTTGTA GCCGCCTCGT
GACCATCAAT GGCGGAAACT GCTGCCGACA AATCTCAATC TCTCGCCGAG GAATATCATG TAAGTGACAA GCAGGAGAAA
ACAGCTGTAG TTGAAAAACC CGTTGAAGTC AAAGAAGTTG AAAACCCACA GGAGGCTGGT TCTGTAGAAG CTGTTGTTGA
GAAAATTGTG GAAGAAACAA CTCCTGTTGC CCCTGCAGTT GCTCAGGAGA GCAGTGAAGT AAGCCCTCCT GCTGCTGAAG
AAAGCACTGA AGAGCAAAGT AGTGGAAATG TTGAGGATAA ATCTGGCAAT GAAGACGCAG CTGAAGAGAC CCCTGAAATC
AAGCTTGAAA CTGCTCCAGC AGATTTCCGT TTTCCAACTA CAAATCAAAC CAGGCATTGC TTTACCCGAT ACATTGAATA
TCATCGATGT GTAGCTGCAA AGGGTGAAAG TGCATCAGAA TGTGACAAGT TTGCTAAGTA TTATCGTTCT CTTTGCCCTG
GTGAATGGAT TGACAGATGG AATGAACAAA GGGAGAACGG AACATTCCCA GGCCCGCTGT AGGTGGTGCA TATTTGAAAT
GGCTGCTCAA TTCGTTGTGC AGTGTTATAT TTGAAATCGT TAGACATAAA CTCCCATACA TTTGGGGAAT TAATAAGAAA
TTTTGGATCC ATGTTTGAAC TAAGCTCGAG TTATACTATT TTCAGGAAGG GCTGGAGAAA TGTCCAGAGA TAAATTTTAC
ATTTTTAATT GGATTATCAG TACTGTAGTC TTCTATAAAT TTCATCCCCT TCTATTGAAC AAAAAACGTT TATTTTGACA
ATTTTCTCAC TTAGTTATAA CAATTATTTG AGAAAAATAG ATTTAGTTGA GAGAATAGAT AGGGAAACGG AGTGATGTAT
AATTTGGCCA ATAAAACAGG AAAAATGAGG TTTTGCAAAG TTAGAGAGAG CATTGCTTTC ATATTTTATT TGTTAATTTC
TCTTTAC

>Vigan.03G178000.01
ATGGCGGAAA CTGCTGCCGA CAAATCTCAA TCTCTCGCCG AGGAATATCA TGTAAGTGAC AAGCAGGAGA AAACAGCTGT
AGTTGAAAAA CCCGTTGAAG TCAAAGAAGT TGAAAACCCA CAGGAGGCTG GTTCTGTAGA AGCTGTTGTT GAGAAAATTG
TGGAAGAAAC AACTCCTGTT GCCCCTGCAG TTGCTCAGGA GAGCAGTGAA GTAAGCCCTC CTGCTGCTGA AGAAAGCACT
GAAGAGCAAA GTAGTGGAAA TGTTGAGGAT AAATCTGGCA ATGAAGACGC AGCTGAAGAG ACCCCTGAAA TCAAGCTTGA
AACTGCTCCA GCAGATTTCC GTTTTCCAAC TACAAATCAA ACCAGGCATT GCTTTACCCG ATACATTGAA TATCATCGAT
GTGTAGCTGC AAAGGGTGAA AGTGCATCAG AATGTGACAA GTTTGCTAAG TATTATCGTT CTCTTTGCCC TGGTGAATGG
ATTGACAGAT GGAATGAACA AAGGGAGAAC GGAACATTCC CAGGCCCGCT GTAG

>Vigan.03G178000.01
MAETAADKSQ SLAEEYHVSD KQEKTAVVEK PVEVKEVENP QEAGSVEAVV EKIVEETTPV APAVAQESSE VSPPAAEEST
EEQSSGNVED KSGNEDAAEE TPEIKLETAP ADFRFPTTNQ TRHCFTRYIE YHRCVAAKGE SASECDKFAK YYRSLCPGEW
IDRWNEQREN GTFPGPL*