GBrowse Details

Vigan.03G181500.01

Basic Information:
Name: Vigan.03G181500.01
Multiple alignment
Variant Information
Position: Chr03:27426990..27431132 (- strand)
Length: 4143
Functional Information:
Description: Similar to bet1-like protein At4g14600-like. [XP_004490412.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.16,10.88,23.19,18.23,27.19,14.21,20.08,20.22
Arabidopsis thaliana homolog: AT4G14600.1
Automatic updates:
Name: NM_001249899 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500358 (LOC100500358), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251108 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306642 (LOC100306642), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:27426990..27427372 (- strand)
Length: 383
Type: three_prime_UTR
Position: Chr03:27427373..27427534 (- strand)
Length: 162
Type: CDS
Position: Chr03:27428459..27428515 (- strand)
Length: 57
Type: CDS
Position: Chr03:27430679..27430796 (- strand)
Length: 118
Type: CDS
Position: Chr03:27430872..27430933 (- strand)
Length: 62
Type: CDS
Position: Chr03:27430934..27431132 (- strand)
Length: 199
Type: five_prime_UTR


>Vigan.03G181500.01
GATGAACCCA GTTGCCTGGC ACAATCCTAT TTCTTTCCTT CTTCCTTCCA TTTTCTTCTC CACTAAGATT TCTCCCTCAT
TAATTCTTCA ACAGCTTAAC TCCTCGACCT AATTTTTCAG TCTGTGCAAC TCATTCCCCT TTAAACATTC AAACAATCAA
AACCCACCAA CCCAATTGGG TTTCTTTTGA TTTCCCACAA TGGCCGCCAA TTCCCACAGA GTGGGTTCTT CCTACGGCGG
CGCCGCCTCT TACAGATCAA GAGATGGGCT TAGCACTCGA CCGGTTGGTG CCTCTGAGGA GATCCAATTA CGAATTGATC
CCATGGACTT GGACGAGGAA ATCACCGGTC TTCATCGCCA AGTTAGAAGG TTGAAACATG TTGCTGAGGA GATAGGAACG
GAAGTGAAGT ATCAGAAAAA TTTTCTTGAA GAATTGCAAA TGACAATGAT AAAGGCTCAA GCGGGAGTGA AGAACAACTT
AAGAAGATTG AACAAGAGCA TCATCCAAAG TGGTTCAAAC CATATCATTC ATGTCATTCT TTTCGCGTTA GTCTGTTTCT
TTGTTGTGTA CCTTTGGTCC AAAATGTTCA GAAAGTGAGT TACGGACCAG CTTCCATGTT AAAAAATCCA GCTAAAAGGG
CTTAATCCAT CAAAACACAT TATTACGTAT TTTGGTGCAG AGAAACGGCT CCATAACCCT TTGGAGTTTT CTATTGAAAT
GTTGACTTTG AGATGAGTTT CTGGGATATA TGACGTAGTT AAAGCAGTAA TTGTATTTAA AAAATGATGA ATGATTTAAG
TTATTAATAG TTTGCGTTGT TATTTTTCTC TATGAATGCT GTGATAAATT AAGAACCTAT GGAGGTTGCA ACCATGATTT
ATGTTTGATG GAATCATAGT TCCAAAGTCC CAAATTACTG GTTTGTTAAT GAAATTAAAA TCCGTGAGAA GCGACAGCAG
AACCAGTTTT TATGGAATGA G

>Vigan.03G181500.01
ATGGCCGCCA ATTCCCACAG AGTGGGTTCT TCCTACGGCG GCGCCGCCTC TTACAGATCA AGAGATGGGC TTAGCACTCG
ACCGGTTGGT GCCTCTGAGG AGATCCAATT ACGAATTGAT CCCATGGACT TGGACGAGGA AATCACCGGT CTTCATCGCC
AAGTTAGAAG GTTGAAACAT GTTGCTGAGG AGATAGGAAC GGAAGTGAAG TATCAGAAAA ATTTTCTTGA AGAATTGCAA
ATGACAATGA TAAAGGCTCA AGCGGGAGTG AAGAACAACT TAAGAAGATT GAACAAGAGC ATCATCCAAA GTGGTTCAAA
CCATATCATT CATGTCATTC TTTTCGCGTT AGTCTGTTTC TTTGTTGTGT ACCTTTGGTC CAAAATGTTC AGAAAGTGA

>Vigan.03G181500.01
MAANSHRVGS SYGGAASYRS RDGLSTRPVG ASEEIQLRID PMDLDEEITG LHRQVRRLKH VAEEIGTEVK YQKNFLEELQ
MTMIKAQAGV KNNLRRLNKS IIQSGSNHII HVILFALVCF FVVYLWSKMF RK*