VIGGS:GBrowse

Vigan.03G191700.01

Basic Information:

Name:	Vigan.03G191700.01 Multiple alignment Variant Information
Position:	Chr03:29659414..29662484 (+ strand)
Length:	3071

Functional Information:

Description:	Similar to protein phosphatase 2C 8-like, partial. [XP_003553817.2, Glycine max]
GO:	Biological Process: protein dephosphorylation (GO:0006470)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: protein serine/threonine phosphatase activity (GO:0004722)
InterPro:	Protein phosphatase 2C, manganese/magnesium aspartate binding site (IPR000222)
	Protein phosphatase 2C (PP2C)-like domain (IPR001932)
	Protein phosphatase 2C (IPR015655)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:32.20,5.00,8.50,3.57,0.73,10.97,1.91,7.31

Automatic updates:

Name:	NM_001354947 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable protein phosphatase 2C 51 (LOC100807235), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:29659414..29659876 (+ strand)
Length:	463
Type:	five_prime_UTR

Position:	Chr03:29659877..29660602 (+ strand)
Length:	726
Type:	CDS

Position:	Chr03:29661088..29661193 (+ strand)
Length:	106
Type:	CDS

Position:	Chr03:29661924..29662228 (+ strand)
Length:	305
Type:	CDS

Position:	Chr03:29662229..29662484 (+ strand)
Length:	256
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G191700.01
TGTCTTGGAA CCTCGCGGAA CTGAACAAAA GCAAAATTTA CGGAAAGCAA CTTCTGTGAT GCCACGTAAA CTAACCTATG
ACTCTGACCT TTCTCTCTCT ATTCATATCA TTTCCTTTCA CCAACTGGCC CCACACTTAC CTCATCTTTC ACACATCCGT
ATCGCATCCC CCAACATCAA CGCTCCACGT ACCTGCCTTT CAATCTCAGT CGTCCACGTC TCCTTCACAA AAATCCAACT
CACTGGTCCA TAAATATCCA CCTGTTACGC CATCACACCC TCCCTTTCAA ATCGACGGTC CACACTCCAC GCCTCTCAGA
TCTCGCAATC AAACACTTTA AATTCCCTCC TTCCACGCTA CACCTCCTTT CTCTTTATTG CCGTTTTTCT TATTTCCACC
TTATTGGCTA TCCCTCTTCT GCTGTCTTCT GCTTTGTTCA GTTCGTTGCA TGCAAAAACC ACTATGAAGA AGCCAAAACA
CCACTCATCG TCGGCCAACG CTGACCGGCG AGTGGAGCCT GATTCCGGTG AGTTTGTCGC CAAGATGAAG AACGGTCGCC
AGAGACGGCT CAAAATCAAG CAAATGAAGT ACACTTGCCA GGCGAAGATC CGCATCAGGA ATGGAACCGT CGGCGTCTCG
CCGACGCCGG CGGAGGACCG GGAGGGAGGG AGCAGAGAGA TTCATGAGCG CGTGGAGATA TCTTTGTCGC TGGCGGCGGC
GTCGTCGTCC TCGGAGGAGG AGGAGCGGTC ATTGTCGGAG AAAAGCGACG GTGTTTTGTC GTACGGGTCA ACGTCTGTGA
TTGGGAGCAG GAAGGAGATG GAGGACGCGG TGAGTGCGGA GATAGGGTTT GCTGCGAAGG AGAGAGGGAA GTACGACTTC
TTCGCGGTGT ACGACGGCCA CGGCGGAGCG CAGGTGGCGG AGGCGTGTCG CAAGCGGTTG CACCGGCTGG TTGCGGAGGA
AGTGGAGAGG AGTGAGAGTC CCGTGGAATG GGACTGGCAG GGAGTGATGG AAGGGTGCTT CCGTAAAATG GACAGCGAGG
TCGCCGGTAA TGCGGCCGTC AGGACTGTGG GTTCCACGGC GGTTGTAGCT GTGATCGCGG CGGAGGAGCT TGTCGTCGCT
AATTGCGGTG ATTGTAGGGC TGTGTTGGGA AGAGGAGGTG AGGCCGTCGA CTTGTCTAGT GATCATAAGC CCGATAGACC
AGACGAGTTG ATGCGAATAG AAGAGGCTGG TGGAAGGGTC ATTAACTGGA ATGGCCAGCG CGTGCTTGGT GTTCTTGCTA
CTTCAAGATC CATAGGAGAT CAGTACCTTC GACCTTATGT GATATCAAAA CCAGAAGTGA CAGTGACGAA GCGAAGCAGC
AAGGATGAAT TTGTGATACT AGCAAGTGAT GGATTGTGGG ATGTTATGTC GAGTGAAGTT GCGTGCCAAG TTGTAAGGAA
ATGCCTGAAT GGACAGATTA GGAGAGTGTG CAATGGAGTT GGGAACCATG AAAACCGTGC TGCCGAGGCT GCAAGCCTCT
TAGCTGAGAT AGCATTGGCA AAGGGAAGTA AAGATAACAC CAGTGTCATT GTAGTTGAGC TAAGAGGAAC AGTAACATAA
CATCTCAGTG TCTACAAAAA CATGTATTTT CTTCTCTAAT TCTTGCCTTC TGCTTTTGGA CTAATATCCA CTCAGGTCTT
GCATCCTCAA TGCCACGAGA GATTATCTAC TACCACATAA TTACGAGTAC TTACATTAGT GTTTCTTCTT TTAATAATGG
CCTCTTATTA ATTCTTCAAA TATCTAAAAT GTCGCTAAAG TTTTGCAATT TTTTTTTGCC AAACTAGCTT GGACAATGTA
AAGGACAAAC ATTTGC

[show][hide][copy]CDS

>Vigan.03G191700.01
ATGAAGAAGC CAAAACACCA CTCATCGTCG GCCAACGCTG ACCGGCGAGT GGAGCCTGAT TCCGGTGAGT TTGTCGCCAA
GATGAAGAAC GGTCGCCAGA GACGGCTCAA AATCAAGCAA ATGAAGTACA CTTGCCAGGC GAAGATCCGC ATCAGGAATG
GAACCGTCGG CGTCTCGCCG ACGCCGGCGG AGGACCGGGA GGGAGGGAGC AGAGAGATTC ATGAGCGCGT GGAGATATCT
TTGTCGCTGG CGGCGGCGTC GTCGTCCTCG GAGGAGGAGG AGCGGTCATT GTCGGAGAAA AGCGACGGTG TTTTGTCGTA
CGGGTCAACG TCTGTGATTG GGAGCAGGAA GGAGATGGAG GACGCGGTGA GTGCGGAGAT AGGGTTTGCT GCGAAGGAGA
GAGGGAAGTA CGACTTCTTC GCGGTGTACG ACGGCCACGG CGGAGCGCAG GTGGCGGAGG CGTGTCGCAA GCGGTTGCAC
CGGCTGGTTG CGGAGGAAGT GGAGAGGAGT GAGAGTCCCG TGGAATGGGA CTGGCAGGGA GTGATGGAAG GGTGCTTCCG
TAAAATGGAC AGCGAGGTCG CCGGTAATGC GGCCGTCAGG ACTGTGGGTT CCACGGCGGT TGTAGCTGTG ATCGCGGCGG
AGGAGCTTGT CGTCGCTAAT TGCGGTGATT GTAGGGCTGT GTTGGGAAGA GGAGGTGAGG CCGTCGACTT GTCTAGTGAT
CATAAGCCCG ATAGACCAGA CGAGTTGATG CGAATAGAAG AGGCTGGTGG AAGGGTCATT AACTGGAATG GCCAGCGCGT
GCTTGGTGTT CTTGCTACTT CAAGATCCAT AGGAGATCAG TACCTTCGAC CTTATGTGAT ATCAAAACCA GAAGTGACAG
TGACGAAGCG AAGCAGCAAG GATGAATTTG TGATACTAGC AAGTGATGGA TTGTGGGATG TTATGTCGAG TGAAGTTGCG
TGCCAAGTTG TAAGGAAATG CCTGAATGGA CAGATTAGGA GAGTGTGCAA TGGAGTTGGG AACCATGAAA ACCGTGCTGC
CGAGGCTGCA AGCCTCTTAG CTGAGATAGC ATTGGCAAAG GGAAGTAAAG ATAACACCAG TGTCATTGTA GTTGAGCTAA
GAGGAACAGT AACATAA

[show][hide][copy]PROTEIN

>Vigan.03G191700.01
MKKPKHHSSS ANADRRVEPD SGEFVAKMKN GRQRRLKIKQ MKYTCQAKIR IRNGTVGVSP TPAEDREGGS REIHERVEIS
LSLAAASSSS EEEERSLSEK SDGVLSYGST SVIGSRKEME DAVSAEIGFA AKERGKYDFF AVYDGHGGAQ VAEACRKRLH
RLVAEEVERS ESPVEWDWQG VMEGCFRKMD SEVAGNAAVR TVGSTAVVAV IAAEELVVAN CGDCRAVLGR GGEAVDLSSD
HKPDRPDELM RIEEAGGRVI NWNGQRVLGV LATSRSIGDQ YLRPYVISKP EVTVTKRSSK DEFVILASDG LWDVMSSEVA
CQVVRKCLNG QIRRVCNGVG NHENRAAEAA SLLAEIALAK GSKDNTSVIV VELRGTVT*