VIGGS:GBrowse

Vigan.03G198100.01

Basic Information:

Name:	Vigan.03G198100.01 Multiple alignment Variant Information
Position:	Chr03:30722369..30724796 (- strand)
Length:	2428

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LYL2, Glycine max]
GO:	Biological Process: rRNA modification (GO:0000154)
	Biological Process: rRNA processing (GO:0006364)
	Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179)
	Molecular Function: rRNA methyltransferase activity (GO:0008649)
	Molecular Function: rRNA (adenine) methyltransferase activity (GO:0016433)
InterPro:	Ribosomal RNA adenine methylase transferase (IPR001737)
	Ribosomal RNA adenine dimethylase (IPR011530)
	Ribosomal RNA adenine methylase transferase, conserved site (IPR020596)
	Ribosomal RNA adenine methylase transferase, N-terminal (IPR020598)
	18S rRNA dimethylase DIM1 (IPR025814)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.68,7.57,4.25,5.02,9.55,11.08,9.97,5.82

Automatic updates:

Name:	NM_001255951 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max S-adenosylmethionine-dependent methyltransferases superfamily protein (LOC100819707), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:30722369..30722868 (- strand)
Length:	500
Type:	three_prime_UTR

Position:	Chr03:30722869..30723609 (- strand)
Length:	741
Type:	CDS

Position:	Chr03:30724353..30724661 (- strand)
Length:	309
Type:	CDS

Position:	Chr03:30724662..30724796 (- strand)
Length:	135
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G198100.01
GTTAACTCTT CTGAGGAGAA TGGACAAAAA TATTTGTAAA TTTTTTTAGA GAGAAACCCT AATTCTCTAG CTGACTTCGT
GTTCCTGCGC GCGCTAGTGT GAGCTCTTTG AACCGAAACA GTGCAGCGCG TTTCAATGGC GGGAGGGAAA GCGAAGAAGG
AGAAGACGAA GGCGCAGCAG CACATGCCGT ATCAGGGAGG AATCTCCTTC CACAAATCGA AGGGCCAGCA CATTCTCAAA
AATCCTTTGC TCGTCGACTC CATCGTGCAG AAATCCGGCG TCAAACCTAC CGACGTCGTC CTCGAGATCG GTCCCGGCAC
TGGAAACCTC ACCAAGAAGC TTCTAGAAGC CGCCAAGAAG GTCATCGCTG TCGAAATTGA TCCCCGCATG GTTCTCGAGC
TCCAGCGACG GTTCCAGGGC ACTCCTCACT CCAATCGCCT TACGGTTATC CAATGTGATG TGCTGCGGAC CGAACTTCCT
TATTTTGACA TATGTGTTGC AAACATTCCC TACCAAATAT CTTCTCCTCT CACATTCAAG TTACTCAATC ACCAGCCTGT
ATTTCGTGCT GCAATCATAA TGTTCCAGAG AGAATTTGCC ATGAGACTGG TAGCGCAGCC TGGTGACAAA CTATATTGTC
GTCTTACCGT GAACACTCAA CTTCATGCCC GAATCTTCCA CCTCCTCAAA GTTGGAAGAA ACAACTTCAG GCCCCCTCCC
AAGGTCGATT CCTCTGTAGT GCGAATTGAG CCCAGGAAAC CCCGTATTGA AGTTAAGCAA AAGGAATGGG ATGGGTTTTT
GCGAATTTGT TTCAACAGGA AGAACAAAAC ACTTGGTTCA ATATTTAGGC AGAAGAGTGT GATCTCCTTG CTTGAAAAGA
ACTACAGAAC TGTGCGGGCG CTGGAACTTG GGCAAGAAGA TTCACTGAAG CAAGCAGATA CCAAAGTGGA CTTTGCTAGT
TTTGGTGATG AAGAAGGTAT GGAGATGGAT GATGATGGAG GAGAAGATGA CGAAATGGAA GTTGAGGATG GGGAAGCTGA
TGAGGTGCAA TCTGAATTCA AAGACAAGGT TTTGGGTGTT CTTAAAGAAG GAGATTTTGA AGAAAAGAGG TCGTCCAAGC
TCACATTGCA GGAATTCCTA TACCTGCTTT CTCTGTTTAA CAAAGCTGGA ATACACTTCT CCTGATTTTA GATGGTCAAT
TTTCTTGATA GCTTCTTCAA TTTTTGATCT ACACTATTTT TTGCTTATTA GCCGTATAGT GCTATCATAA ACTGTTCTTA
AGAGTTGTAT TTTGTTGAGC TCCTTCGTGG ATATGTAGTA CTACATGTAA TCTATAGTGT TTTGATTAAA TGTTATTCTT
CCTTCATTGC TTTATAAGGA TCTGCATCTG TAACTTTCTG TTTGGTGTAA TCTTCATTCC TAATTTGCGA ATGTTCTAAT
TTTCTTTTTG TAATGCAACC TGATTGGCAG TCTGAATTGT GGATAATGAT TGTGAGTCAT ATTGTAGTAC GGACGAATCG
ATATTTTGTT AGAGCTTTTT CTTTGTCGGA GGTCAAATTT CAATATCTGG TACTAAAATT CATGGCTAGT CTTTTGGTGA
TTTGAGGCAT ATGAAATTCT ATGGTTGGAA TGTAATAAAT TTCTGTACTA CCTTGATTGA ATGATACACC TTAAGGGTTC
TGTAG

[show][hide][copy]CDS

>Vigan.03G198100.01
ATGGCGGGAG GGAAAGCGAA GAAGGAGAAG ACGAAGGCGC AGCAGCACAT GCCGTATCAG GGAGGAATCT CCTTCCACAA
ATCGAAGGGC CAGCACATTC TCAAAAATCC TTTGCTCGTC GACTCCATCG TGCAGAAATC CGGCGTCAAA CCTACCGACG
TCGTCCTCGA GATCGGTCCC GGCACTGGAA ACCTCACCAA GAAGCTTCTA GAAGCCGCCA AGAAGGTCAT CGCTGTCGAA
ATTGATCCCC GCATGGTTCT CGAGCTCCAG CGACGGTTCC AGGGCACTCC TCACTCCAAT CGCCTTACGG TTATCCAATG
TGATGTGCTG CGGACCGAAC TTCCTTATTT TGACATATGT GTTGCAAACA TTCCCTACCA AATATCTTCT CCTCTCACAT
TCAAGTTACT CAATCACCAG CCTGTATTTC GTGCTGCAAT CATAATGTTC CAGAGAGAAT TTGCCATGAG ACTGGTAGCG
CAGCCTGGTG ACAAACTATA TTGTCGTCTT ACCGTGAACA CTCAACTTCA TGCCCGAATC TTCCACCTCC TCAAAGTTGG
AAGAAACAAC TTCAGGCCCC CTCCCAAGGT CGATTCCTCT GTAGTGCGAA TTGAGCCCAG GAAACCCCGT ATTGAAGTTA
AGCAAAAGGA ATGGGATGGG TTTTTGCGAA TTTGTTTCAA CAGGAAGAAC AAAACACTTG GTTCAATATT TAGGCAGAAG
AGTGTGATCT CCTTGCTTGA AAAGAACTAC AGAACTGTGC GGGCGCTGGA ACTTGGGCAA GAAGATTCAC TGAAGCAAGC
AGATACCAAA GTGGACTTTG CTAGTTTTGG TGATGAAGAA GGTATGGAGA TGGATGATGA TGGAGGAGAA GATGACGAAA
TGGAAGTTGA GGATGGGGAA GCTGATGAGG TGCAATCTGA ATTCAAAGAC AAGGTTTTGG GTGTTCTTAA AGAAGGAGAT
TTTGAAGAAA AGAGGTCGTC CAAGCTCACA TTGCAGGAAT TCCTATACCT GCTTTCTCTG TTTAACAAAG CTGGAATACA
CTTCTCCTGA

[show][hide][copy]PROTEIN

>Vigan.03G198100.01
MAGGKAKKEK TKAQQHMPYQ GGISFHKSKG QHILKNPLLV DSIVQKSGVK PTDVVLEIGP GTGNLTKKLL EAAKKVIAVE
IDPRMVLELQ RRFQGTPHSN RLTVIQCDVL RTELPYFDIC VANIPYQISS PLTFKLLNHQ PVFRAAIIMF QREFAMRLVA
QPGDKLYCRL TVNTQLHARI FHLLKVGRNN FRPPPKVDSS VVRIEPRKPR IEVKQKEWDG FLRICFNRKN KTLGSIFRQK
SVISLLEKNY RTVRALELGQ EDSLKQADTK VDFASFGDEE GMEMDDDGGE DDEMEVEDGE ADEVQSEFKD KVLGVLKEGD
FEEKRSSKLT LQEFLYLLSL FNKAGIHFS*