VIGGS:GBrowse

Vigan.03G201600.01

Basic Information:

Name:	Vigan.03G201600.01 Multiple alignment Variant Information
Position:	Chr03:31448892..31450374 (- strand)
Length:	1483

Functional Information:

Description:	Similar to Histone-lysine N-methyltransferase SUV420H14-20, putative. [XP_007019001.1, Theobroma cacao]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:17.84,19.80,11.62,16.27,17.49,19.06,17.91,11.45
Arabidopsis thaliana homolog:	AT4G08240.2

Automatic updates:

Name:	NM_001250715 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305595 (LOC100305595), transcript variant 2, mRNA.
PubMed ID:	21667246 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001352509 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305595 (LOC100305595), transcript variant 1, mRNA.
PubMed ID:	21667246 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:31448892..31449304 (- strand)
Length:	413
Type:	three_prime_UTR

Position:	Chr03:31449305..31449484 (- strand)
Length:	180
Type:	CDS

Position:	Chr03:31449969..31450037 (- strand)
Length:	69
Type:	CDS

Position:	Chr03:31450118..31450285 (- strand)
Length:	168
Type:	CDS

Position:	Chr03:31450286..31450374 (- strand)
Length:	89
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G201600.01
AAACAATATT TCACCGCCGT TGAAAGGGGA GGAAAGGAAG AGAATCTCAA ACTTCGGTTT GATTAGAAAA AACAGAACAG
AGAGATAAAA TGTCAATGAG AGGAATCGGA GGGCCACTTC TATGCATCGG AGATCTTCTG AACGACGTCG GAGAAGAACA
ACAAGGACAC TCTCTCCGTC GCGAAGCTTC TCCCACTCCC TCCTCTTCCC ATCTCAACGA TAACGATCCA CCTCCTAACC
TCCTCACACT CTTCCAGAAA CATTACGATC ACTTGAATTC GGCTCTCTCC GGCACCGACC ACTCTTGGAC TTCTCTCACT
TTGAAGTTAT GCACTTCTTT AGAAACTGCT AATCAGTTGG TTCAGTCGAC CAACTCAAAT GTTGCATCCT TGTCAGAGAA
GGTTGAGGAA CTGCAGAAAA TTGTTAAGAG AGGGGATTCG GCGATAGCAG CAGCGAAGGC ACTTTATTAT GTTACCCCTG
ACAATCACAG TAGTGCCTCA AAGTGAAACA AGGTTAGTAA AATTGTATAT CTGGTATGAT TGGACAGGGT ATTTGTTATG
GTGTTTATTT TTAGTCCAAT AGAAGGATTT TTTGCTATAT GGAGAGAAAG ACATTCAATA CTGAAAAGTT GTCAAAATCT
TATGGCTACA AATTTCCAGC AGTTATTTTT TATTTGCAGG GCTATTGTTT ATTTCTTATG TTTTTTTTTT ATGTCATTTA
TTTTAAGAGC GACAGCCGGA ACATAGTGTT TCATTGCTGA CCATGAATTT AGTTTCACAT ACATCTGTGG ATGGTTTGAG
TTAGCACTCT GATTCTACAG CATCAAAACT GAATAAGAAC AGAAGTACGA TTCAATCAAT TTTTGTTTAA ATTGTAGTTG
ATCACCATGG GGCATATTAT CTTTGCAGTG ATGCTTTCA

[show][hide][copy]CDS

>Vigan.03G201600.01
ATGTCAATGA GAGGAATCGG AGGGCCACTT CTATGCATCG GAGATCTTCT GAACGACGTC GGAGAAGAAC AACAAGGACA
CTCTCTCCGT CGCGAAGCTT CTCCCACTCC CTCCTCTTCC CATCTCAACG ATAACGATCC ACCTCCTAAC CTCCTCACAC
TCTTCCAGAA ACATTACGAT CACTTGAATT CGGCTCTCTC CGGCACCGAC CACTCTTGGA CTTCTCTCAC TTTGAAGTTA
TGCACTTCTT TAGAAACTGC TAATCAGTTG GTTCAGTCGA CCAACTCAAA TGTTGCATCC TTGTCAGAGA AGGTTGAGGA
ACTGCAGAAA ATTGTTAAGA GAGGGGATTC GGCGATAGCA GCAGCGAAGG CACTTTATTA TGTTACCCCT GACAATCACA
GTAGTGCCTC AAAGTGA

[show][hide][copy]PROTEIN

>Vigan.03G201600.01
MSMRGIGGPL LCIGDLLNDV GEEQQGHSLR REASPTPSSS HLNDNDPPPN LLTLFQKHYD HLNSALSGTD HSWTSLTLKL
CTSLETANQL VQSTNSNVAS LSEKVEELQK IVKRGDSAIA AAKALYYVTP DNHSSASK*