VIGGS:GBrowse

Vigan.03G203900.01

Basic Information:

Name:	Vigan.03G203900.01 Multiple alignment Variant Information
Position:	Chr03:32552118..32557737 (- strand)
Length:	5620

Functional Information:

Description:	Similar to Nitrate reductase. [V7B5B6, Phaseolus vulgaris]
GO:	Biological Process: nitrate assimilation (GO:0042128)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: electron carrier activity (GO:0009055)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: heme binding (GO:0020037)
	Molecular Function: molybdenum ion binding (GO:0030151)
	Molecular Function: molybdopterin cofactor binding (GO:0043546)
	Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor (GO:0046857)
	Molecular Function: metal ion binding (GO:0046872)
	Molecular Function: flavin adenine dinucleotide binding (GO:0050660)
InterPro:	Oxidoreductase, molybdopterin-binding domain (IPR000572)
	Cytochrome b5-like heme/steroid binding domain (IPR001199)
	Oxidoreductase FAD/NAD(P)-binding (IPR001433)
	Flavoprotein pyridine nucleotide cytochrome reductase (IPR001709)
	NADH:cytochrome b5 reductase (CBR) (IPR001834)
	Moybdenum cofactor oxidoreductase, dimerisation (IPR005066)
	Oxidoreductase, FAD-binding domain (IPR008333)
	Eukaryotic molybdopterin oxidoreductase (IPR008335)
	Nitrate reductase NADH dependent (IPR012137)
	Immunoglobulin E-set (IPR014756)
	Ferredoxin reductase-type FAD-binding domain (IPR017927)
	Riboflavin synthase-like beta-barrel (IPR017938)
	Cytochrome b5, heme-binding site (IPR018506)
	Oxidoreductase, molybdopterin binding site (IPR022407)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.35,0.20,1.21,313.03,40.87,1.09,137.54,124.51
Arabidopsis thaliana homolog:	AT1G37130.1, AT1G77760.1

Automatic updates:

Name:	NM_001251161 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max nitrate reductase (INR1), mRNA.
PubMed ID:	8534848 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:32552118..32552376 (- strand)
Length:	259
Type:	three_prime_UTR

Position:	Chr03:32552377..32553275 (- strand)
Length:	899
Type:	CDS

Position:	Chr03:32553426..32553864 (- strand)
Length:	439
Type:	CDS

Position:	Chr03:32555179..32555411 (- strand)
Length:	233
Type:	CDS

Position:	Chr03:32555612..32555752 (- strand)
Length:	141
Type:	CDS

Position:	Chr03:32556581..32557538 (- strand)
Length:	958
Type:	CDS

Position:	Chr03:32557539..32557737 (- strand)
Length:	199
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G203900.01
CATTTAAAAA GAATATTTTT AGTGAAGAAA TAGATATGAA GTGAGGGAAG ACTCGTCTCT TTCATGGCTC TTCCACTCTA
TAAAAACCCC AATCCACAAT CTTAGAACAA CCAGTTTTCT TTTCTCTCCC ACCGAGAGTT ACACAAAACA AAGACAAAAA
GAGAAACAAA AGAACTCATA ATTTTCTTCC TTTCTCACAA TGGCGGCTTT CGTTGACAAC CGTCAATTCG GCACTCACAT
GAACCGCGTC GTTCGCAGTT GCGGGCAGGA TCTGAAGCCC CCGCTGCCGT TGGATTTCGA TCTGGACTCA TCCAGCAGCG
ACGAGGATGA AAACGACGAC GCTTCGTACA TGAAAGAGCT CATACGAAAA GCGAACGCGG AAACGGAGGC GTCGGTTATG
GACCCGCGCG ACGAGGGAAC GGCAGATCAG TGGGTCGCAC GGAACGCCTC CATGGTCCGC CTCACAGGGA AGCACCCGTT
CAACGCGGAA TCCCCCTTGC CGCGTCTCAT GCACCACGGC TTCATCACAC CGGTCCCGCT CCACTACGTC CGCAACCACG
GTCCAGTTCC CAAGGCCAAG TGGGAAGACT GGACCGTTGA GATAACCGGT CTAGTCAAAC GCCCAACCCG GTTCACCATG
GAACGCCTCG TGCGCGAGTT CCCCCACCGC GAGTTCCCCG CCACGCTCGT CTGCGCCGGG AACCGCCGCA AGGAGCAGAA
CATGGTCAAG AAGACCATCG GCTTCAACTG GGGCTCCGCC GGCACCTCCA CCTCGGTGTG GCGCGGCGTG CCGCTGCGTC
ACGTGCTGCG CCGCTGCGGG ATCCTTACAC GTGCGAAGGG TGCGCTTCAT GTGTGCTTCG AGGGCGCCGA GAATCTGCCC
GGCGGCGGCG GATCGAAGTA CGGAACGAGC ATCTCGAGGG AGATGGCCAT GGACCCCTCG CGCGACATCA TCCTTGCGTA
CATGCAAAAC GGCGAGCCTC TGGCACCGGA TCACGGCTTC CCCGTTCGCA TGATTATTCC GGGGTTTATC GGTGGCAGAA
TGGTGAAGTG GCTGAAACGC ATTGTTGTTA CTGAACTTGA GTGCGACAAT CATTATCATT ACAAGGATAA CAGAGTGCTC
CCTTCCCATG TTAGTCCAGA ACTTGCCAAT GAAGAAGGTT GGTGGTACAG ACCAGAGTAC ATAATCAACG AGTTGAATAT
AAACTCAGTG ATAACGACTC CGTGTCACGA CGAGATTTTG CCCATCAACT CATGGACAAC GCAGAGGCCT TACGTAGTCA
GAGGCTACGC TTATTCTGGT GGTGGGAGGA AAGTGACACG TGTGGAGGTA ACACTGGATG GTGGAGAAAC GTGGCACGTG
TGCACACTGG ACCATCCTGA GAAACCTAAC AAATATGGCA AGTATTGGTG CTGGTGCTTC TGGTCTTTGG AGGTGGAGGT
GTTGGACCTG CTGGGGACCA AAGAGATTGC AGTTCGAGCT TGGGATGAAG GTCTCAACAC GCAGCCAGAA AACCTAATTT
GGAATCTTAT GGGCATGATG AACAACTGTT GGTTCAGAGT GAAGACAAAT GTGTGCAAGC CCCACAAGGG TGAGATTGGA
ATGGTGTTTG AACACCCAAC CCAACCAGGG AACCAACCTG GTGGATGGAT GGCCAAGGAA AAGCACTTGG AGACATCACA
AGACCCCAAA CCAAGCCTCA AAAAGAGTGT GTCTACGCCC TTCATGAACA CCAATTCAAA AATGTTCTCC ATCTCCGAAG
TTAAAAAACA TAGCATCCCT GACTCCGCTT GGATCATCGT CCACGGTCAC GTCTACGACT GCACTCGCTT CCTCAAAGAT
CACCCTGGTG GCACCGACAG CATCCTCATC AATGCCGGCA CTGACTGCAC CGAAGAGTTT GACGCCATCC ACTCCGACAA
AGCAAAGAAG ATGCTCGAAG ATTATCGAAT TGGCGAGCTC ATCACTACAG GTTACACTTC AGACTCATCG CCGAACAACT
CCGTGCATGG CAATTCCGAA TTCACCCATT TGGCTCCCAT CAAGGAAATC ACCACAAAAC CACCACTACC GCCACGCAGT
GTGGCTCTCA ACCCACGTGA GAAAATCCCA TGCAAACTCG TGTCAAAGAC CTCCATTTCC CACGACGTGA GGCTTTTCCG
TTTCGCACTG CCCTCAGAGA ACCAACTCGT GGGTTTACCA GTGGGTAAGC ATATTTTCTT GTGCGCCACC ATAGATGGAA
AGCTATGCAT GCGAGCCTAC ACTCCGACAA GTGGCGTGGA TGAAGTGGGG TTCTTCGATT TGCTCATCAA GGTTTACTTC
AAAGGCGTGC ACCCCAAGTT CCCGAACGGA GGACTTATGT CACAGCATTT GGAGTCTCTC TCCATTGGGT CCATGTTGGA
CGTGAAGGGT CCAGTGGGTC ACATAGAGTA CACCGGCAGA GGCAACTTCA CGGTTCATGG GAAACCTAGA TCCGCAAAGA
GGTTAGCCAT GCTGGCTGGT GGAACCGGGA TCACACCAAT CTACCAAGTG GCGCAAGCGA TTCTAAAAGA CCCAGAGGAC
CTCACCGAAA TGCATGTGGT GTATGCAAAC CGCACAGAGG ATGACATTCT TCTGAGGGAG GAGTTGGATG CATGGGCGAA
GGAACACAGT GAGCGGTTCA GGGTGTGGTA CGTTGTGGAA ACCGCGAAGG AAGGGTGGGA ATACAGTGTG GGATTCATCA
CAGAAACTAT CATGAGGGAG CATCTTCCAG AAGCTTCAAG GGATTCCTTG GCTTTGACGT GTGGACCACC ACCCATGATT
CAGTTCGCGG TGCAGCCCAA CTTGGAGAAG ATGGGGTACG ATATCAAGAA TGATTTGCTC GTGTTTTAGG GTTTCAAGAA
GTAGATTACT GGACTATGTT GTGTATGAGT ATTGCTAGTG TTGCTTCTGT AGATGGACGT TCGTGGACTA TTGTTTGTCT
CATTCTTTGT AAGTCAAGTA CATGAAAAAC TGTATATGAT TTGCCATTAT CACTATGTAA CGTAGATAGG TATGTCAAGA
TATTTTGACT ACCTTAGTGT ATATAAATTC AAGTTATGCA TGCTTATTTA CTCTCTTCGT TTCAAGGTCT ATTTTATTCC
CACTAGTA

[show][hide][copy]CDS

>Vigan.03G203900.01
ATGGCGGCTT TCGTTGACAA CCGTCAATTC GGCACTCACA TGAACCGCGT CGTTCGCAGT TGCGGGCAGG ATCTGAAGCC
CCCGCTGCCG TTGGATTTCG ATCTGGACTC ATCCAGCAGC GACGAGGATG AAAACGACGA CGCTTCGTAC ATGAAAGAGC
TCATACGAAA AGCGAACGCG GAAACGGAGG CGTCGGTTAT GGACCCGCGC GACGAGGGAA CGGCAGATCA GTGGGTCGCA
CGGAACGCCT CCATGGTCCG CCTCACAGGG AAGCACCCGT TCAACGCGGA ATCCCCCTTG CCGCGTCTCA TGCACCACGG
CTTCATCACA CCGGTCCCGC TCCACTACGT CCGCAACCAC GGTCCAGTTC CCAAGGCCAA GTGGGAAGAC TGGACCGTTG
AGATAACCGG TCTAGTCAAA CGCCCAACCC GGTTCACCAT GGAACGCCTC GTGCGCGAGT TCCCCCACCG CGAGTTCCCC
GCCACGCTCG TCTGCGCCGG GAACCGCCGC AAGGAGCAGA ACATGGTCAA GAAGACCATC GGCTTCAACT GGGGCTCCGC
CGGCACCTCC ACCTCGGTGT GGCGCGGCGT GCCGCTGCGT CACGTGCTGC GCCGCTGCGG GATCCTTACA CGTGCGAAGG
GTGCGCTTCA TGTGTGCTTC GAGGGCGCCG AGAATCTGCC CGGCGGCGGC GGATCGAAGT ACGGAACGAG CATCTCGAGG
GAGATGGCCA TGGACCCCTC GCGCGACATC ATCCTTGCGT ACATGCAAAA CGGCGAGCCT CTGGCACCGG ATCACGGCTT
CCCCGTTCGC ATGATTATTC CGGGGTTTAT CGGTGGCAGA ATGGTGAAGT GGCTGAAACG CATTGTTGTT ACTGAACTTG
AGTGCGACAA TCATTATCAT TACAAGGATA ACAGAGTGCT CCCTTCCCAT GTTAGTCCAG AACTTGCCAA TGAAGAAGGT
TGGTGGTACA GACCAGAGTA CATAATCAAC GAGTTGAATA TAAACTCAGT GATAACGACT CCGTGTCACG ACGAGATTTT
GCCCATCAAC TCATGGACAA CGCAGAGGCC TTACGTAGTC AGAGGCTACG CTTATTCTGG TGGTGGGAGG AAAGTGACAC
GTGTGGAGGT AACACTGGAT GGTGGAGAAA CGTGGCACGT GTGCACACTG GACCATCCTG AGAAACCTAA CAAATATGGC
AAGTATTGGT GCTGGTGCTT CTGGTCTTTG GAGGTGGAGG TGTTGGACCT GCTGGGGACC AAAGAGATTG CAGTTCGAGC
TTGGGATGAA GGTCTCAACA CGCAGCCAGA AAACCTAATT TGGAATCTTA TGGGCATGAT GAACAACTGT TGGTTCAGAG
TGAAGACAAA TGTGTGCAAG CCCCACAAGG GTGAGATTGG AATGGTGTTT GAACACCCAA CCCAACCAGG GAACCAACCT
GGTGGATGGA TGGCCAAGGA AAAGCACTTG GAGACATCAC AAGACCCCAA ACCAAGCCTC AAAAAGAGTG TGTCTACGCC
CTTCATGAAC ACCAATTCAA AAATGTTCTC CATCTCCGAA GTTAAAAAAC ATAGCATCCC TGACTCCGCT TGGATCATCG
TCCACGGTCA CGTCTACGAC TGCACTCGCT TCCTCAAAGA TCACCCTGGT GGCACCGACA GCATCCTCAT CAATGCCGGC
ACTGACTGCA CCGAAGAGTT TGACGCCATC CACTCCGACA AAGCAAAGAA GATGCTCGAA GATTATCGAA TTGGCGAGCT
CATCACTACA GGTTACACTT CAGACTCATC GCCGAACAAC TCCGTGCATG GCAATTCCGA ATTCACCCAT TTGGCTCCCA
TCAAGGAAAT CACCACAAAA CCACCACTAC CGCCACGCAG TGTGGCTCTC AACCCACGTG AGAAAATCCC ATGCAAACTC
GTGTCAAAGA CCTCCATTTC CCACGACGTG AGGCTTTTCC GTTTCGCACT GCCCTCAGAG AACCAACTCG TGGGTTTACC
AGTGGGTAAG CATATTTTCT TGTGCGCCAC CATAGATGGA AAGCTATGCA TGCGAGCCTA CACTCCGACA AGTGGCGTGG
ATGAAGTGGG GTTCTTCGAT TTGCTCATCA AGGTTTACTT CAAAGGCGTG CACCCCAAGT TCCCGAACGG AGGACTTATG
TCACAGCATT TGGAGTCTCT CTCCATTGGG TCCATGTTGG ACGTGAAGGG TCCAGTGGGT CACATAGAGT ACACCGGCAG
AGGCAACTTC ACGGTTCATG GGAAACCTAG ATCCGCAAAG AGGTTAGCCA TGCTGGCTGG TGGAACCGGG ATCACACCAA
TCTACCAAGT GGCGCAAGCG ATTCTAAAAG ACCCAGAGGA CCTCACCGAA ATGCATGTGG TGTATGCAAA CCGCACAGAG
GATGACATTC TTCTGAGGGA GGAGTTGGAT GCATGGGCGA AGGAACACAG TGAGCGGTTC AGGGTGTGGT ACGTTGTGGA
AACCGCGAAG GAAGGGTGGG AATACAGTGT GGGATTCATC ACAGAAACTA TCATGAGGGA GCATCTTCCA GAAGCTTCAA
GGGATTCCTT GGCTTTGACG TGTGGACCAC CACCCATGAT TCAGTTCGCG GTGCAGCCCA ACTTGGAGAA GATGGGGTAC
GATATCAAGA ATGATTTGCT CGTGTTTTAG

[show][hide][copy]PROTEIN

>Vigan.03G203900.01
MAAFVDNRQF GTHMNRVVRS CGQDLKPPLP LDFDLDSSSS DEDENDDASY MKELIRKANA ETEASVMDPR DEGTADQWVA
RNASMVRLTG KHPFNAESPL PRLMHHGFIT PVPLHYVRNH GPVPKAKWED WTVEITGLVK RPTRFTMERL VREFPHREFP
ATLVCAGNRR KEQNMVKKTI GFNWGSAGTS TSVWRGVPLR HVLRRCGILT RAKGALHVCF EGAENLPGGG GSKYGTSISR
EMAMDPSRDI ILAYMQNGEP LAPDHGFPVR MIIPGFIGGR MVKWLKRIVV TELECDNHYH YKDNRVLPSH VSPELANEEG
WWYRPEYIIN ELNINSVITT PCHDEILPIN SWTTQRPYVV RGYAYSGGGR KVTRVEVTLD GGETWHVCTL DHPEKPNKYG
KYWCWCFWSL EVEVLDLLGT KEIAVRAWDE GLNTQPENLI WNLMGMMNNC WFRVKTNVCK PHKGEIGMVF EHPTQPGNQP
GGWMAKEKHL ETSQDPKPSL KKSVSTPFMN TNSKMFSISE VKKHSIPDSA WIIVHGHVYD CTRFLKDHPG GTDSILINAG
TDCTEEFDAI HSDKAKKMLE DYRIGELITT GYTSDSSPNN SVHGNSEFTH LAPIKEITTK PPLPPRSVAL NPREKIPCKL
VSKTSISHDV RLFRFALPSE NQLVGLPVGK HIFLCATIDG KLCMRAYTPT SGVDEVGFFD LLIKVYFKGV HPKFPNGGLM
SQHLESLSIG SMLDVKGPVG HIEYTGRGNF TVHGKPRSAK RLAMLAGGTG ITPIYQVAQA ILKDPEDLTE MHVVYANRTE
DDILLREELD AWAKEHSERF RVWYVVETAK EGWEYSVGFI TETIMREHLP EASRDSLALT CGPPPMIQFA VQPNLEKMGY
DIKNDLLVF*