GBrowse Details

Vigan.03G205500.01

Basic Information:
Name: Vigan.03G205500.01
Multiple alignment
Variant Information
Position: Chr03:32909200..32914135 (- strand)
Length: 4936
Functional Information:
Description: Similar to Proteasome subunit beta type. [C6SV91, Glycine max]
GO: Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Molecular Function: endopeptidase activity (GO:0004175)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Proteasome, subunit alpha/beta (IPR001353)
Proteasome beta-type subunit, conserved site (IPR016050)
Proteasome B-type subunit (IPR023333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.91,32.51,76.78,56.64,142.42,186.22,76.12,65.68
Arabidopsis thaliana homolog: AT1G21720.1
Automatic updates:
Name: NM_001251061 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome beta subunit C1 (LOC100499664), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:32909200..32909501 (- strand)
Length: 302
Type: three_prime_UTR
Position: Chr03:32909502..32909550 (- strand)
Length: 49
Type: CDS
Position: Chr03:32910423..32910517 (- strand)
Length: 95
Type: CDS
Position: Chr03:32911475..32911559 (- strand)
Length: 85
Type: CDS
Position: Chr03:32912046..32912135 (- strand)
Length: 90
Type: CDS
Position: Chr03:32913611..32913718 (- strand)
Length: 108
Type: CDS
Position: Chr03:32913818..32914005 (- strand)
Length: 188
Type: CDS
Position: Chr03:32914006..32914135 (- strand)
Length: 130
Type: five_prime_UTR


>Vigan.03G205500.01
TGGTGGCTTA ACCCCAAAGA AATCTGGGAT GCTCTTCGTC TTCAAATACC AACATTATTT TACGATTTAA CCCCAAACCC
AAACCCAAAC CAAGAATCTG CATCATCCTC GCCGGGATCA AATTCAAAGC ATGTCGATCT TCGAGTACAA CGGAAGCGCC
GTCGTGGCCA TGGTCGGCAA GAACTGCTTC GCCATTGCCA GCGACCGAAG GCTCGGCGTT CAGCTCCAAA CCATAGCCAC
CGATTTCCAA CGCATTTCCA AGATTCACGA TAAGCTCTTC ATCGCTCTCT CTGGCCTCGC CACCGATGCT CAGACTCTGT
ATCAGCGTCT CGTTTTCCGG CACAAACTGT ATCAGCTTCG TGAAGAGAGG GATATGAAAC CGGAGACCTT TGCCAGTTTG
GTCTCTGCCT TGCTCTATGA GAAAAGGTTT GGTCCATATT TTTGCCAGCC TGTAATTGCT GGATTAGGGG ACGATGACAA
ACCATTCATT TGCACAATGG ATTGTCTTGG AGCAAAGGAG CTTGCAAAAG ATTTTGTTGT TTCTGGCACT GCATCCGAGT
CCCTGTATGG TGCTTGTGAG TCAATGTTTA AGCCTGACAT GGAACCAGAG GAGTTGTTTG AGACCATCTC CCAAGCACTG
CTATCGTCTG TAGATCGTGA TTGTTTAAGT GGTTGGGGAG GACATGTCTA TGTTGTTACA CCAACTGAAG TAAAGGAAAG
GATTTTAAAG GGAAGGATGG ATTAACTTTG TAAGACAACT GGGTTTCTGT TTGGTTTGGA GCTGAATAGC ATGGCATTTA
CCATTGTTGT AGAGTGGTAC CTTGTTATTG TGGCTTTTAG TTAAAATGTA CCCTGACTGT TTTTATAGAC GGTCTCAATT
GTTCTATATT TAGATTACCA GGGAAAGGAG ATTCTTGAGT TTCTATGCTT CAGGCAGACA GGGTTGAATG ATACGAGAAT
TGCCTGATCT ATATCTCTCC CGTTTATGTT TTATTCTATC AGTGTCCTAG TATTAATTTC GAGAAATTGA TAATTCTTTT
TCAAAAA

>Vigan.03G205500.01
ATGTCGATCT TCGAGTACAA CGGAAGCGCC GTCGTGGCCA TGGTCGGCAA GAACTGCTTC GCCATTGCCA GCGACCGAAG
GCTCGGCGTT CAGCTCCAAA CCATAGCCAC CGATTTCCAA CGCATTTCCA AGATTCACGA TAAGCTCTTC ATCGCTCTCT
CTGGCCTCGC CACCGATGCT CAGACTCTGT ATCAGCGTCT CGTTTTCCGG CACAAACTGT ATCAGCTTCG TGAAGAGAGG
GATATGAAAC CGGAGACCTT TGCCAGTTTG GTCTCTGCCT TGCTCTATGA GAAAAGGTTT GGTCCATATT TTTGCCAGCC
TGTAATTGCT GGATTAGGGG ACGATGACAA ACCATTCATT TGCACAATGG ATTGTCTTGG AGCAAAGGAG CTTGCAAAAG
ATTTTGTTGT TTCTGGCACT GCATCCGAGT CCCTGTATGG TGCTTGTGAG TCAATGTTTA AGCCTGACAT GGAACCAGAG
GAGTTGTTTG AGACCATCTC CCAAGCACTG CTATCGTCTG TAGATCGTGA TTGTTTAAGT GGTTGGGGAG GACATGTCTA
TGTTGTTACA CCAACTGAAG TAAAGGAAAG GATTTTAAAG GGAAGGATGG ATTAA

>Vigan.03G205500.01
MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDKLF IALSGLATDA QTLYQRLVFR HKLYQLREER
DMKPETFASL VSALLYEKRF GPYFCQPVIA GLGDDDKPFI CTMDCLGAKE LAKDFVVSGT ASESLYGACE SMFKPDMEPE
ELFETISQAL LSSVDRDCLS GWGGHVYVVT PTEVKERILK GRMD*