GBrowse Details

Vigan.03G211800.01

Basic Information:
Name: Vigan.03G211800.01
Multiple alignment
Variant Information
Position: Chr03:33667341..33671770 (- strand)
Length: 4430
Functional Information:
Description: Similar to floral homeotic protein PMADS 2-like. [XP_004498359.1, Cicer arietinum]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.32,0.00,215.32,0.37,0.09,0.00,0.00,1.54
Arabidopsis thaliana homolog: AT5G20240.1
Automatic updates:
Name: NM_001248456 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499997 (LOC100499997), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254097 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max floral homeotic protein GLOBOSA-like (LOC100817554), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:33667341..33667546 (- strand)
Length: 206
Type: three_prime_UTR
Position: Chr03:33667547..33667681 (- strand)
Length: 135
Type: CDS
Position: Chr03:33669467..33669511 (- strand)
Length: 45
Type: CDS
Position: Chr03:33669773..33669802 (- strand)
Length: 30
Type: CDS
Position: Chr03:33670276..33670375 (- strand)
Length: 100
Type: CDS
Position: Chr03:33670481..33670542 (- strand)
Length: 62
Type: CDS
Position: Chr03:33671071..33671137 (- strand)
Length: 67
Type: CDS
Position: Chr03:33671338..33671636 (- strand)
Length: 299
Type: CDS
Position: Chr03:33671637..33671770 (- strand)
Length: 134
Type: five_prime_UTR


>Vigan.03G211800.01
AGGAGACCAA TGGTTAAGAA AGTGCGACAA CTAACAAAGC CAAATCAAAC ATCATGTAAA AGTTACTTGG GTTGGCTTTG
TCACTTTTCC ACTGTGCCCC TAAGAAAGTT CCTTATCCTC AAACCAGTTA TGTCATGTTG TTACCTCTTC CCTTACTTTT
ATCTTTGCAA CCCTCTCATC TTTTCCATTT CACAAGCAAG AAAAACCAGA GAACATTGAA GAGAGAAGAG AAAAAAGTGG
GAGAAATGGG GAGGGGAAAG ATTGAGATCA AGAGGATCGA GAACTCGAGC AACAGACAAG TTACCTACTC CAAGAGAAAG
AATGGGATCC TAAAGAAGGC CAAGGAAATC ACTGTTCTAT GTGATGCACA AGTTTCCCTT ATCATCTTTG CTGCATCTGG
GAAGATGCAT GACTACATCA GCCCTTCCAC CACTTTGATT GACATATTGG AGAGGTACCA CAAGACCTCA GGGAAGAGGC
TTTGGGACGC CAAGCATGAG AACCTAAACG GCGAAATTGA GAGACTCAAG AAAGAGAATG ACAGCATGCA AATTGAGCTC
AGGCACTTGA AGGGGGAAGA TATAAACTCT CTGAACTACA AGGAACTCAT GGCCTTAGAA GATGCCTTAG AAACTGGTCT
CGTCAGTGTT CGTGAGAAAC AGATGGATGT GTACAGGATG TTCAGGAGAA ATGACAAGAT CTTGGAGGAG GAGAACAGGG
AACTTAATTT TCTCTGGCAA CAACGTTTGG CAGTGGAAGG AGCAAGAGAA GTGGAGAACG GGTTTGATCA GAGTGTGAGG
GATTACAATT CCCATATGCC ATTTGCCTTT CGTGTGCAGC CAATGCAGCC AAATCTTCAA GAAAGGATCT GATATAATAC
TCTGTCAAAT CAAAACTCCA TCTTGCTGTT TTCATCACAA TCTTATGTGC ATGTCACAAC TTTTTAAGTA TGTTTTGGTA
TCTGTTTGTT GCTAATAAAC AACTCAATTT CACTTCGTCA TTCAACTCAC TCTTATGCGT CTCCGACTTT GTCTCCTGTT
TTGTGTGTTT GTCTCACTAT TATATATACT TTCGCCTC

>Vigan.03G211800.01
ATGTTGTTAC CTCTTCCCTT ACTTTTATCT TTGCAACCCT CTCATCTTTT CCATTTCACA AGCAAGAAAA ACCAGAGAAC
ATTGAAGAGA GAAGAGAAAA AAGTGGGAGA AATGGGGAGG GGAAAGATTG AGATCAAGAG GATCGAGAAC TCGAGCAACA
GACAAGTTAC CTACTCCAAG AGAAAGAATG GGATCCTAAA GAAGGCCAAG GAAATCACTG TTCTATGTGA TGCACAAGTT
TCCCTTATCA TCTTTGCTGC ATCTGGGAAG ATGCATGACT ACATCAGCCC TTCCACCACT TTGATTGACA TATTGGAGAG
GTACCACAAG ACCTCAGGGA AGAGGCTTTG GGACGCCAAG CATGAGAACC TAAACGGCGA AATTGAGAGA CTCAAGAAAG
AGAATGACAG CATGCAAATT GAGCTCAGGC ACTTGAAGGG GGAAGATATA AACTCTCTGA ACTACAAGGA ACTCATGGCC
TTAGAAGATG CCTTAGAAAC TGGTCTCGTC AGTGTTCGTG AGAAACAGAT GGATGTGTAC AGGATGTTCA GGAGAAATGA
CAAGATCTTG GAGGAGGAGA ACAGGGAACT TAATTTTCTC TGGCAACAAC GTTTGGCAGT GGAAGGAGCA AGAGAAGTGG
AGAACGGGTT TGATCAGAGT GTGAGGGATT ACAATTCCCA TATGCCATTT GCCTTTCGTG TGCAGCCAAT GCAGCCAAAT
CTTCAAGAAA GGATCTGA

>Vigan.03G211800.01
MLLPLPLLLS LQPSHLFHFT SKKNQRTLKR EEKKVGEMGR GKIEIKRIEN SSNRQVTYSK RKNGILKKAK EITVLCDAQV
SLIIFAASGK MHDYISPSTT LIDILERYHK TSGKRLWDAK HENLNGEIER LKKENDSMQI ELRHLKGEDI NSLNYKELMA
LEDALETGLV SVREKQMDVY RMFRRNDKIL EEENRELNFL WQQRLAVEGA REVENGFDQS VRDYNSHMPF AFRVQPMQPN
LQERI*