GBrowse Details

Vigan.03G212600.01

Basic Information:
Name: Vigan.03G212600.01
Multiple alignment
Variant Information
Position: Chr03:33871956..33876122 (+ strand)
Length: 4167
Functional Information:
Description: Similar to Alcohol dehydrogenase A. [V5N936, Phaseolus vulgaris]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase, C-terminal (IPR013149)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:83.25,24.90,1199.56,13.23,1.17,33090.90,13.93,964.42
Arabidopsis thaliana homolog: AT1G77120.1
Automatic updates:
Name: NM_001255213 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alcohol dehydrogenase 1-like (LOC100775490), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:33871956..33872060 (+ strand)
Length: 105
Type: five_prime_UTR
Position: Chr03:33872061..33872097 (+ strand)
Length: 37
Type: CDS
Position: Chr03:33872915..33873051 (+ strand)
Length: 137
Type: CDS
Position: Chr03:33873813..33873859 (+ strand)
Length: 47
Type: CDS
Position: Chr03:33874142..33874467 (+ strand)
Length: 326
Type: CDS
Position: Chr03:33874676..33874758 (+ strand)
Length: 83
Type: CDS
Position: Chr03:33874855..33874930 (+ strand)
Length: 76
Type: CDS
Position: Chr03:33875137..33875198 (+ strand)
Length: 62
Type: CDS
Position: Chr03:33875302..33875397 (+ strand)
Length: 96
Type: CDS
Position: Chr03:33875496..33875657 (+ strand)
Length: 162
Type: CDS
Position: Chr03:33875770..33875886 (+ strand)
Length: 117
Type: CDS
Position: Chr03:33875887..33876122 (+ strand)
Length: 236
Type: three_prime_UTR


>Vigan.03G212600.01
TTCCAACTTT TTTCCACTAT AAATAGAGTA TACATCTTCA ATGCAAAATC ATCCTCAAGT TTTCAATACT TAATTAATTC
CTCTTCAAAA AAAAAAATTG AAGCCATGTC TGCTACTGCT GGTAAAGTCA TCAGGTGCAG AGCTGCGGTG GCATGGGAAC
CAGAGAAGCC ATTGTCGATA GAGACCATAG AAGTGGCACC ACCTGGGAAA GGTGAAGTGC GTTTGAAAAT CCTCTTCAAC
TCCCTTTGCC GTACTGATGT TTACTGGTGG GATGTTAAGG GTCAGAATCC GCTGTTTCCT CGTATTTTAG GTCATGAAGC
TTCAGGGATT GTGGAGAGCG TGGGTGAGGG TGTGACCGAT CTGAAACCAG GAGATCATGC ACTCCCAATA TTCACTGGGG
AGTGTGGGGA ATGCAAATAT TGCAAATCGG AAGAGAGCAA CCTGTGTGAG CTGCTAAGGA TCAACAGTGA CAGAGGAGTT
ATGCTGAGTG ATGGCAAAAC AAGGTTCTCC AAAAATGGAC AGCCCATTTA CCACTTTCTG GGAACCTCCA CATTCAGTGA
ATACACTGTT CTTCATGCTG GCTGTGTTGC CAAGATCAAC CCTGCTGCTC CACTTGACAA AGTTTGTGTT GTCAGTTGCG
GATTTTGCAC AGGTTTTGGT GCTACTGTAA ATGTTGCAAA ACCAAAGCCT AATGATACTG TTGCTGTCTT TGGTTTGGGA
GCTGTTGGTC TTTCTGCCTG TGAAGGAGCA AGGGTTTCTG GTGCATCGAG AATCATTGGG GTTGATTTAC TCTCCAGTCG
GTTTGAACAA GCCAAAAAAT TTGGGGTCAC TGACTTTGTG AACCCCAAAG AGCACAACAA ACCAGTTCAA CAGGTAATTG
CTGAAATGAC TGGTGGAGGA GTCGATCGTG CTGTTGAATG CACTGGAAGC ATCCAAGCCT CGATCTCAGC ATTTGAATGC
ACTCATGATG GTTGGGGTGT TGCTGTACTT GTTAGTGTTC CACACAAGGA TGCTGAATTC AAAACTCATC CAATGAAGTT
CATGGAAGGA AGAACTCTGA AGGGTACCTT CTATGGCCAC TTCAAACCCC GCACTGATAT TCCTGGTGTT GTGGAGAAGT
ACCTGAACAA GGAGCTGGAA CTGGAGAAAC TTATCACTCA CAGTGTGCCA TTCTCAGAGA TCAACACGGC ATTTGACCTT
ATGCTGAAAG GGGAGGGAAT AAGGTGTTTG ATCCGCATGG AAGAGTGAAC GAGTTATGTT CTCTGGTGTG AGAACAGTGT
TTGTCTGTGA TGTGAAAAAA GAGAGTTGAA GAATAAATTT AGCACGTAAT TCTGTTCTTG AATCTGTGCT ATGTGAGTGT
GTAAAGTAGT AATTGGAGGT GATGACTTTC TTGGTCATCT TCCTGCCTCT GTTACTTCTT ATGCGAATGG TGTGTCGTGT
AACTTTGTTC TGTTTTCTAT TATATATTTA TATCTATATT TTCA

>Vigan.03G212600.01
ATGTCTGCTA CTGCTGGTAA AGTCATCAGG TGCAGAGCTG CGGTGGCATG GGAACCAGAG AAGCCATTGT CGATAGAGAC
CATAGAAGTG GCACCACCTG GGAAAGGTGA AGTGCGTTTG AAAATCCTCT TCAACTCCCT TTGCCGTACT GATGTTTACT
GGTGGGATGT TAAGGGTCAG AATCCGCTGT TTCCTCGTAT TTTAGGTCAT GAAGCTTCAG GGATTGTGGA GAGCGTGGGT
GAGGGTGTGA CCGATCTGAA ACCAGGAGAT CATGCACTCC CAATATTCAC TGGGGAGTGT GGGGAATGCA AATATTGCAA
ATCGGAAGAG AGCAACCTGT GTGAGCTGCT AAGGATCAAC AGTGACAGAG GAGTTATGCT GAGTGATGGC AAAACAAGGT
TCTCCAAAAA TGGACAGCCC ATTTACCACT TTCTGGGAAC CTCCACATTC AGTGAATACA CTGTTCTTCA TGCTGGCTGT
GTTGCCAAGA TCAACCCTGC TGCTCCACTT GACAAAGTTT GTGTTGTCAG TTGCGGATTT TGCACAGGTT TTGGTGCTAC
TGTAAATGTT GCAAAACCAA AGCCTAATGA TACTGTTGCT GTCTTTGGTT TGGGAGCTGT TGGTCTTTCT GCCTGTGAAG
GAGCAAGGGT TTCTGGTGCA TCGAGAATCA TTGGGGTTGA TTTACTCTCC AGTCGGTTTG AACAAGCCAA AAAATTTGGG
GTCACTGACT TTGTGAACCC CAAAGAGCAC AACAAACCAG TTCAACAGGT AATTGCTGAA ATGACTGGTG GAGGAGTCGA
TCGTGCTGTT GAATGCACTG GAAGCATCCA AGCCTCGATC TCAGCATTTG AATGCACTCA TGATGGTTGG GGTGTTGCTG
TACTTGTTAG TGTTCCACAC AAGGATGCTG AATTCAAAAC TCATCCAATG AAGTTCATGG AAGGAAGAAC TCTGAAGGGT
ACCTTCTATG GCCACTTCAA ACCCCGCACT GATATTCCTG GTGTTGTGGA GAAGTACCTG AACAAGGAGC TGGAACTGGA
GAAACTTATC ACTCACAGTG TGCCATTCTC AGAGATCAAC ACGGCATTTG ACCTTATGCT GAAAGGGGAG GGAATAAGGT
GTTTGATCCG CATGGAAGAG TGA

>Vigan.03G212600.01
MSATAGKVIR CRAAVAWEPE KPLSIETIEV APPGKGEVRL KILFNSLCRT DVYWWDVKGQ NPLFPRILGH EASGIVESVG
EGVTDLKPGD HALPIFTGEC GECKYCKSEE SNLCELLRIN SDRGVMLSDG KTRFSKNGQP IYHFLGTSTF SEYTVLHAGC
VAKINPAAPL DKVCVVSCGF CTGFGATVNV AKPKPNDTVA VFGLGAVGLS ACEGARVSGA SRIIGVDLLS SRFEQAKKFG
VTDFVNPKEH NKPVQQVIAE MTGGGVDRAV ECTGSIQASI SAFECTHDGW GVAVLVSVPH KDAEFKTHPM KFMEGRTLKG
TFYGHFKPRT DIPGVVEKYL NKELELEKLI THSVPFSEIN TAFDLMLKGE GIRCLIRMEE *