GBrowse Details

Vigan.03G214500.01

Basic Information:
Name: Vigan.03G214500.01
Multiple alignment
Variant Information
Position: Chr03:34152933..34156018 (+ strand)
Length: 3086
Functional Information:
Description: Similar to Uncharacterized protein. [I1LXB5, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: F-box domain (IPR001810)
Leucine-rich repeat, cysteine-containing subtype (IPR006553)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:244.96,113.95,6.95,7.50,2.36,33.67,2.35,8.39
Arabidopsis thaliana homolog: AT1G21410.1, AT1G77000.1
Automatic updates:
Name: NM_001255712 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max F-box protein SKP2B-like (LOC100793275), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:34152933..34153635 (+ strand)
Length: 703
Type: five_prime_UTR
Position: Chr03:34153636..34153901 (+ strand)
Length: 266
Type: CDS
Position: Chr03:34154516..34154864 (+ strand)
Length: 349
Type: CDS
Position: Chr03:34154948..34155089 (+ strand)
Length: 142
Type: CDS
Position: Chr03:34155335..34155699 (+ strand)
Length: 365
Type: CDS
Position: Chr03:34155700..34156018 (+ strand)
Length: 319
Type: three_prime_UTR


>Vigan.03G214500.01
GGGGTTTTTT TTTTTTTTTC ATCTGTGGTT GCTGCTTTAT ATTTTAAAAA GGTTTAGTTT TTCTTTTGAT CAACTTTTTG
TTTTTTTTTT GTATGGTTAG TTTGGTCCTT TATCTTACGA TTTGAAGTAT TTGGGTTCTT TTTAACATGC ATGTCAAATT
TGTGCATAAG GGGTTTTCAA TGTTTGAAGG AGAAAATGTT TCATACTCTT TCTGTGATGA TCAAGTTTGA TGCTTTGTGC
CAATCGTGCC ATTAAGAAGC ACGTTAAGGG TATTTCTGGA ATATGCAGAA TTTTTCCAAT TAGATTAGAC AGTTTTTATC
ATTTATTTAT TATGTATTTC CTTCACAAAA TGTTATAATA TTGGGGTTAG GGTTAGTTTT TCATAACGAG GTGAATTAAG
AATGGAATTT TTATAGGAGA GGATCCACAT TTGGTCTTTT GAAAGATGGT ACATGTAAAA AACAAAAGGA AAAAAAATAT
TCAAAAGCTC ATCTGTTGAT TGTTAGTTGC TATGATTGTT ATTATCTTTC TCTGGTAGTA ACTTGTGGCC GTTAACTAAA
TTTATGGTTT GTGGTTATTA TTTTGTTTGC ACTGAAGCAA GGGCTACTCC AAGGTTCTAG AATTTGTTGT GTTATCCTTG
TTTCTTGTGT GGCATCACTG CTACTTTGTT TGTAAAAGCA AGGGCAAAGT TTATCTGGCT TTGATGGAAA TGGTTGGCAA
GGAGGGTTTG AGAACTGGGG TGTTGAACTT GAGTTTTGGG AAGCTTATGA TGGTTGGTGG TGGTGAAAAT AGTGGGAAAG
GAGTGAACTT GAAAGCTGGG GTGATCACTG ATTGGAAAGA TATTCCAGTG GAGCTTTTGA TGCAAATTTT GTCACTTGTT
GATGATCAAA CGGTGATCAT AGCTTCTGAA GTTTGTCGTG GGTGGAGAGA GGCAATTTGC TTTGGCCTTA CCCGGTTGTC
ACTCTCATGG TGTAGCAAGA ACATGAATAA CTTGGTCCTA TCTCTTACTC CTAAATTTAC AAAACTGCAA ACTTTAATCC
TTCGTCAAGA CAAACCCCAA CTAGAGGACA ATGCTGTTGC GTCTATTGCA AATTTCTGTC ATGACCTGCA AATCCTGGAC
CTCAGCAAAA GTTTCAAGCT CACAGATCGT TCATTGTATG CCATAGCCCT AGGTTGTTGG CATCTTACAA AACTGAACAT
TAGTGGTTGT TCAGCCTTTA GTGACAGTGC TCTGGCTTAC CTAGCCAGTT TATGCAGAGA GCTTAAAGTA TTGAATCTAT
GTGGATGTGT TAAAGCTGCA TCCGACACTG CACTACAGGC AATTGGACGT TACTGCAATC AGTTACAGTC TTTGAACCTT
GGATGGTGTG AAAATGTCAG TGATGTTGGA GTAACGAGTT TAGCTTATGG CTGCCCTGAT CTTCGAACAC TTGACTTGTG
TGGTTGTGTC CTTATAACAG ATGACAGTGT AATTGCCTTG GCAAACAGAT GTCCTCATCT TAGGTCCCTT GGACTGTACT
ACTGCCAAAA CATAACAGAC AGAGCAATGT ATTCTTTGGC ACAAAGCAAA GTGAAGAACA GAATGTGGGG ATCTGTGAAA
GGGGGAAATG ATGAGGATGG ATTAAGGACT TTGAACATCA GCCAATGCAC AGCACTCACC CCTTCTGCTG TGCAGGCTGT
GTGTGACTCA TCCCCTGCAC TCCACACCTG TTCTGGAAGA CACTCGCTCA TCATGAGTGG TTGTCTCAGT CTGACATCTG
TGCACTGTCC ATGTGCTGTC CAAGCACACC GTGGTATCAG CACCATTCCT AATACAGCAC ATTGAGCCAC ACTGGTTCAT
GCAGAAACAC ACTTTGGAGA AGTTCACTTG AAGGGTTCAG AGTTTTAGGT CTTCTGCATT AGTTTATATT AATGCTGCAT
CATTTCATGT TTATTGTAGA ACTGGTTGAA CTTGGTGCTT GAGCTGCTGT TCATATCTGG ATTTCATGTG AAAAGCTTAG
GATATTTTGG GTGTAAAAAT GGGGTTTGTT CCTAGCTTGG CTATGAATTA ATGGTGAGAT AGACTTACTA TTGCATATCC
TTTTATGCAA GGACGCTTGT TTTTTCTTCT TGAAGTTGAG AAATATGAGA TAAATTGAGT TTTA

>Vigan.03G214500.01
ATGGAAATGG TTGGCAAGGA GGGTTTGAGA ACTGGGGTGT TGAACTTGAG TTTTGGGAAG CTTATGATGG TTGGTGGTGG
TGAAAATAGT GGGAAAGGAG TGAACTTGAA AGCTGGGGTG ATCACTGATT GGAAAGATAT TCCAGTGGAG CTTTTGATGC
AAATTTTGTC ACTTGTTGAT GATCAAACGG TGATCATAGC TTCTGAAGTT TGTCGTGGGT GGAGAGAGGC AATTTGCTTT
GGCCTTACCC GGTTGTCACT CTCATGGTGT AGCAAGAACA TGAATAACTT GGTCCTATCT CTTACTCCTA AATTTACAAA
ACTGCAAACT TTAATCCTTC GTCAAGACAA ACCCCAACTA GAGGACAATG CTGTTGCGTC TATTGCAAAT TTCTGTCATG
ACCTGCAAAT CCTGGACCTC AGCAAAAGTT TCAAGCTCAC AGATCGTTCA TTGTATGCCA TAGCCCTAGG TTGTTGGCAT
CTTACAAAAC TGAACATTAG TGGTTGTTCA GCCTTTAGTG ACAGTGCTCT GGCTTACCTA GCCAGTTTAT GCAGAGAGCT
TAAAGTATTG AATCTATGTG GATGTGTTAA AGCTGCATCC GACACTGCAC TACAGGCAAT TGGACGTTAC TGCAATCAGT
TACAGTCTTT GAACCTTGGA TGGTGTGAAA ATGTCAGTGA TGTTGGAGTA ACGAGTTTAG CTTATGGCTG CCCTGATCTT
CGAACACTTG ACTTGTGTGG TTGTGTCCTT ATAACAGATG ACAGTGTAAT TGCCTTGGCA AACAGATGTC CTCATCTTAG
GTCCCTTGGA CTGTACTACT GCCAAAACAT AACAGACAGA GCAATGTATT CTTTGGCACA AAGCAAAGTG AAGAACAGAA
TGTGGGGATC TGTGAAAGGG GGAAATGATG AGGATGGATT AAGGACTTTG AACATCAGCC AATGCACAGC ACTCACCCCT
TCTGCTGTGC AGGCTGTGTG TGACTCATCC CCTGCACTCC ACACCTGTTC TGGAAGACAC TCGCTCATCA TGAGTGGTTG
TCTCAGTCTG ACATCTGTGC ACTGTCCATG TGCTGTCCAA GCACACCGTG GTATCAGCAC CATTCCTAAT ACAGCACATT
GA

>Vigan.03G214500.01
MEMVGKEGLR TGVLNLSFGK LMMVGGGENS GKGVNLKAGV ITDWKDIPVE LLMQILSLVD DQTVIIASEV CRGWREAICF
GLTRLSLSWC SKNMNNLVLS LTPKFTKLQT LILRQDKPQL EDNAVASIAN FCHDLQILDL SKSFKLTDRS LYAIALGCWH
LTKLNISGCS AFSDSALAYL ASLCRELKVL NLCGCVKAAS DTALQAIGRY CNQLQSLNLG WCENVSDVGV TSLAYGCPDL
RTLDLCGCVL ITDDSVIALA NRCPHLRSLG LYYCQNITDR AMYSLAQSKV KNRMWGSVKG GNDEDGLRTL NISQCTALTP
SAVQAVCDSS PALHTCSGRH SLIMSGCLSL TSVHCPCAVQ AHRGISTIPN TAH*