VIGGS:GBrowse

Vigan.03G215000.01

Basic Information:

Name:	Vigan.03G215000.01 Multiple alignment Variant Information
Position:	Chr03:34207052..34212297 (- strand)
Length:	5246

Functional Information:

Description:	Similar to ras-related protein RABC1-like. [XP_004498372.1, Cicer arietinum]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:126.13,65.26,13.95,14.70,14.98,12.65,14.76,16.04
Arabidopsis thaliana homolog:	AT1G43890.1

Automatic updates:

Name:	NM_001248900 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499773 (LOC100499773), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001254512 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABC1-like (LOC100794330), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:34207052..34207783 (- strand)
Length:	732
Type:	three_prime_UTR

Position:	Chr03:34207784..34207894 (- strand)
Length:	111
Type:	CDS

Position:	Chr03:34208579..34208707 (- strand)
Length:	129
Type:	CDS

Position:	Chr03:34208868..34208989 (- strand)
Length:	122
Type:	CDS

Position:	Chr03:34209665..34209730 (- strand)
Length:	66
Type:	CDS

Position:	Chr03:34210419..34210487 (- strand)
Length:	69
Type:	CDS

Position:	Chr03:34211864..34212005 (- strand)
Length:	142
Type:	CDS

Position:	Chr03:34212006..34212297 (- strand)
Length:	292
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G215000.01
GTGTGGGTGC GAAAACACCG ACAACCAAAA CAATCACCGC AAAAGGCACG CGACAAACTT TAAACGGGTT TTCCATAACC
TTCTATACAC TCCTTCACTT CCATCCTTTC CCTTCACTTT CTGCTTCCTT CCACTTTCCA TCGAATCGAA GCAATTTCCA
AGGAATCGAA TAAAAGAAGA AAAAGAAAGA AAAGCAAAAC CCTTCTTAGA TCCAATCCAA AATTGAACCT ATCCATCAAA
TTAAGAGCCA AGTCCAAGCA TTGTCGATTG AATTTCTCAT CTGGGATTCT CAATGGATGC TTCGTCTTCC TCGAGTCAAC
CCGAATTCGA TTACTTGTTC AAGCTTCTCT TGATTGGGGA TTCCGGCGTT GGCAAAAGCA CCCTGCTTTT GAGCTTCACC
TCCGATAATT TCGAGGATCT TTCTCCCACC ATCGGTGTAG ATTTCAAAGT TAAGTATGTT ACAATTGGAG GAAAAAAATT
AAAACTTGCT ATTTGGGACA CAGCGGGGCA GGAAAGGTTT AGAACACTTA CTAGTTCATA TTATAGAGGA GCTCAAGGAA
TAATTTTGGT ATATGATGTC ACAAGGCGGG AAACTTTTAC GAATCTATCT GATATATGGG CTAAAGAAAT TGACCTTTAC
TCAACCAATC AAGATTGCAT CAAGATGCTT GTAGGAAACA AAGTTGATAA GGAAAGTGAA AGGGTTGTCA GCAAAACTGA
AGGGATAAAC TTTGCAAGGG AATATGGATG TCTATTTACT GAGTGCAGTG CAAAAACAAG AGTCAATGTT GCACAATGTT
TTGATGAGCT TGTAATGAAG ATTTTGGAGA CACCAAGTCT CTTGGCTGAG GGCTCATCTG GTGGGAAAAA GAACATCTTC
AAGCAGAAAG CACAAAATTC TGATGCTACA AGTGGTGGCT GCTGCTCATG ATTTACATGT TTAAGGGGGC TTTCACCTTC
CACTTCTTGG TATGATCTGG ATTTCAAGGG CAATTAAATT CATTACGTGT AACAAAATAA CTTTATTATA GGATGTATAT
CAAGATTAAA TTATTTTTCT TCTCAAGAAT TTACCTTATG TTTAAAGATC TCCATGTTAT TTGGTTTGAG CAATCATCTG
GGCATAGTTC ATAGTGCACC TGCATATGAA TACTGTTTGT ATATATAACG CTTTTGATGT TTTAACATGA TCAACGCTGT
GCTTCAAGGG GACATTTTTC GTCGACAAAC GCGTAGCAGT TATTAAGCTA CCATCTTCTT CGACGTAAAA GTAGTATGCA
ACATCATATA TTTGTTTAAT CTGCAACCGA GTGTTCAGAT ATGGCAAAGC AGTAAATTCA TAGCCATGAC CCAACGTATC
TTGTTATCAA ATTAACAACT AATTATTCAT GGTCATTGCA TATTAGAGTC AAATTATAAT TAGAAAAGAA CAATTGGAAC
ATTACCTTAA TTTGACTCAG TGGATTGAGG ACAGGGCAAA AGAAAACACT TTGCGTCATG CTTTAAATGT GTATACAGTC
TTAATTAGAA GCCTGTCAGA TATTGTCATT TCATGATGCT GATAAGGATT GATTTACCTC TGAAACATGA ATTCTTATGA
GAGGTTATGT ACTCGACGGT TGACATTTAA TTAAAAATAT ATCACACTAA TCTTAAATTC AAT

[show][hide][copy]CDS

>Vigan.03G215000.01
ATGGATGCTT CGTCTTCCTC GAGTCAACCC GAATTCGATT ACTTGTTCAA GCTTCTCTTG ATTGGGGATT CCGGCGTTGG
CAAAAGCACC CTGCTTTTGA GCTTCACCTC CGATAATTTC GAGGATCTTT CTCCCACCAT CGGTGTAGAT TTCAAAGTTA
AGTATGTTAC AATTGGAGGA AAAAAATTAA AACTTGCTAT TTGGGACACA GCGGGGCAGG AAAGGTTTAG AACACTTACT
AGTTCATATT ATAGAGGAGC TCAAGGAATA ATTTTGGTAT ATGATGTCAC AAGGCGGGAA ACTTTTACGA ATCTATCTGA
TATATGGGCT AAAGAAATTG ACCTTTACTC AACCAATCAA GATTGCATCA AGATGCTTGT AGGAAACAAA GTTGATAAGG
AAAGTGAAAG GGTTGTCAGC AAAACTGAAG GGATAAACTT TGCAAGGGAA TATGGATGTC TATTTACTGA GTGCAGTGCA
AAAACAAGAG TCAATGTTGC ACAATGTTTT GATGAGCTTG TAATGAAGAT TTTGGAGACA CCAAGTCTCT TGGCTGAGGG
CTCATCTGGT GGGAAAAAGA ACATCTTCAA GCAGAAAGCA CAAAATTCTG ATGCTACAAG TGGTGGCTGC TGCTCATGA

[show][hide][copy]PROTEIN

>Vigan.03G215000.01
MDASSSSSQP EFDYLFKLLL IGDSGVGKST LLLSFTSDNF EDLSPTIGVD FKVKYVTIGG KKLKLAIWDT AGQERFRTLT
SSYYRGAQGI ILVYDVTRRE TFTNLSDIWA KEIDLYSTNQ DCIKMLVGNK VDKESERVVS KTEGINFARE YGCLFTECSA
KTRVNVAQCF DELVMKILET PSLLAEGSSG GKKNIFKQKA QNSDATSGGC CS*