GBrowse Details

Vigan.03G216100.01

Basic Information:
Name: Vigan.03G216100.01
Multiple alignment
Variant Information
Position: Chr03:34361474..34363560 (+ strand)
Length: 2087
Functional Information:
Description: Similar to Acyl-[acyl-carrier-protein] desaturase. [A1YNA0, Glycine max]
GO: Biological Process: fatty acid metabolic process (GO:0006631)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300)
InterPro: Fatty acid desaturase, type 2 (IPR005067)
Ferritin-like superfamily (IPR009078)
Ribonucleotide reductase-related (IPR012348)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.24,0.20,4.03,1.35,476.52,27.30,82.23,5.43
Arabidopsis thaliana homolog: AT1G43800.1
Automatic updates:
Name: NM_001249462 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stearoyl-ACP desaturase (SACPD-C), mRNA.
PubMed ID: 28461402 NCBI(pubmed)
24886084 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:34361474..34361773 (+ strand)
Length: 300
Type: five_prime_UTR
Position: Chr03:34361774..34362370 (+ strand)
Length: 597
Type: CDS
Position: Chr03:34362486..34363052 (+ strand)
Length: 567
Type: CDS
Position: Chr03:34363053..34363560 (+ strand)
Length: 508
Type: three_prime_UTR


>Vigan.03G216100.01
TTTAATATGC ACACCCTGAA ACTTTTGTAT TTTCATGCCC TGTAACATTT TTTAAATGAC AAAAATACCC TTCCTTAAGT
ACCTATCACT ACCCTTAGAA ATGGTATTTT TTTCTTAACC AAAACAACAA CTTCTCAATG TATAGAGTCA AATTTCCACA
AAAAATTTCA TAAATTTCAA AACAACTTAT ATGGCATTTT CGAAATTATA AGAAAAACAA CGACTTATCA CAATTCATAC
CCTTTACAAA TATCTTACTC CCCTAAGCAG CACACACAGT TTCACTCAAA CAACGAAACC ATGCAGATAC CACCCTGCAA
CTCCATCACC ACTCAAACAC TTGTTCCACG GGCTTATACA ACAAGCTCAT GCCACCGCCA CCTCTTGCCA CCGCCCAAAG
CCGCCGTCTC CGCCGTCTGC ACGGCGTCGC TGAAGGCTCG GAGGACCCAC TCAATGCCTC CGGAGAAAAT GGAGGTTTTC
AAGTCGTTGG AGGGCTGGGC CTCGGAGTGG GTCCTGCCAC TGCTAAAGCC CGTGGAGCAA TGCTGGCAGC CTCAGAACTT
GGTCCCTGAC TCATCACTGC CGTTCGAAGA GTTCAGCGAG GAGGTTAAAG CCCTTCGCGA ACGCACCAAG GAGCTCCCCG
ACGAGTACTT CGTAGTGTTG GTGGGTGACA TGGTCACCGA AGACGCGCTT CCCACTTATC AGACCATGAT CAACAACCTC
GACGGCGTGA AAGACGACTG TGGAACCAGT CCAAGCCCGT GGGCCGTGTG GACCCGGGCC TGGACCGCAG AAGAAAACCG
ACACGGAGAT TTGCTCAGAA CTTATTTGTA CCTCTCCGGT CGCGTTGACA TGGCTAAGGT TGAGAAAACT GTCCATTACC
TCATCGGAGC TGGGATGGAC CCTGGAACAG AGAACAATCC TTATTTAGGG TTTGTGTACA CTTCGTTCCA AGAGCGAGCA
ACTTTCGTGG CGCATGGGAA CACTGCTCGG CTTGCGAAGG AAGGGGGTGA TCCAGTGCTT GCGCGCATAT GTGGAACCAT
TGCTGCGGAT GAGAAGCGCC ATGAGAATGC ATATTCAAGG ATTGTGGAGA AGCTTCTAGA AGTTGATCCC AGTGGAGCGA
TGCTTGCAAT AGGAAACATG ATGGAGAAGA AGATCACAAT GCCGGCACAT CTTATGTACG ATGGGGACGA CCCTAAGCTA
TTCGAGCATT ACTCTGCAGT GGCCCAGCGA ATGGGCGTGT ACACAGCCAA TGATTATGCA GATATCTTGG AGTTTCTGGT
TGGACGGTGG AGATTGGAGA AGCTTGAAGG TTTGACGGGG GAAGGAAAGC GGGCACAGGA TTACGTGTGC GGGTTAGCGC
CTAGGATTAG GAAGTTGCAA GAACGCGCTG ATGAGCGAGC GCGTAAGATG AAGGCGCAGA GTGTGAAGTT CAGTTGGGTG
TTCAATAGGG AACTGCTTTT GTGAAATTTG AGTTCAGAGT TGTGTGATGA TTAATTAAAT TAAAGAGCAG AAAGCCCTTT
TGCACATGGA AGTTGTGTCT AATGGGGTTG ATTAAGTGAT GTTATTACAA GTTTAGGGTA GTAAGTATTA ATATTATAGA
GTTTTGTTGT TTTGCCTTTT GCTTATAATT AATAAGTAGG AAGGAAGTAT TAGCATGGAT TTGCGTGTAG TGGACACATT
GTTGGATCAA TGGTTGGTTG TTTTGGTGGA TACAAAACTA GTAGGACTTT TGCTATGTAA CGTTTGGTTT TTGACTTCTA
TTTATCTTAT ACAGGCATTC ACATCCAATG GGTGGTTTTC CTAGAGTATT ATTCTCTTGC ATAGCTTGAA TTTCATTCTT
CATAGCTTTA GTCCATTGGG TGATTAACCT ACTTTTTCAT AGGATTGTGG CTCAGCTGAA CCGGAAAGAT TGTATTTAAG
ATGATTAGCA TATAGATTTT CACAAGATAA AACACCATTG AGTAAATATA TG

>Vigan.03G216100.01
ATGCAGATAC CACCCTGCAA CTCCATCACC ACTCAAACAC TTGTTCCACG GGCTTATACA ACAAGCTCAT GCCACCGCCA
CCTCTTGCCA CCGCCCAAAG CCGCCGTCTC CGCCGTCTGC ACGGCGTCGC TGAAGGCTCG GAGGACCCAC TCAATGCCTC
CGGAGAAAAT GGAGGTTTTC AAGTCGTTGG AGGGCTGGGC CTCGGAGTGG GTCCTGCCAC TGCTAAAGCC CGTGGAGCAA
TGCTGGCAGC CTCAGAACTT GGTCCCTGAC TCATCACTGC CGTTCGAAGA GTTCAGCGAG GAGGTTAAAG CCCTTCGCGA
ACGCACCAAG GAGCTCCCCG ACGAGTACTT CGTAGTGTTG GTGGGTGACA TGGTCACCGA AGACGCGCTT CCCACTTATC
AGACCATGAT CAACAACCTC GACGGCGTGA AAGACGACTG TGGAACCAGT CCAAGCCCGT GGGCCGTGTG GACCCGGGCC
TGGACCGCAG AAGAAAACCG ACACGGAGAT TTGCTCAGAA CTTATTTGTA CCTCTCCGGT CGCGTTGACA TGGCTAAGGT
TGAGAAAACT GTCCATTACC TCATCGGAGC TGGGATGGAC CCTGGAACAG AGAACAATCC TTATTTAGGG TTTGTGTACA
CTTCGTTCCA AGAGCGAGCA ACTTTCGTGG CGCATGGGAA CACTGCTCGG CTTGCGAAGG AAGGGGGTGA TCCAGTGCTT
GCGCGCATAT GTGGAACCAT TGCTGCGGAT GAGAAGCGCC ATGAGAATGC ATATTCAAGG ATTGTGGAGA AGCTTCTAGA
AGTTGATCCC AGTGGAGCGA TGCTTGCAAT AGGAAACATG ATGGAGAAGA AGATCACAAT GCCGGCACAT CTTATGTACG
ATGGGGACGA CCCTAAGCTA TTCGAGCATT ACTCTGCAGT GGCCCAGCGA ATGGGCGTGT ACACAGCCAA TGATTATGCA
GATATCTTGG AGTTTCTGGT TGGACGGTGG AGATTGGAGA AGCTTGAAGG TTTGACGGGG GAAGGAAAGC GGGCACAGGA
TTACGTGTGC GGGTTAGCGC CTAGGATTAG GAAGTTGCAA GAACGCGCTG ATGAGCGAGC GCGTAAGATG AAGGCGCAGA
GTGTGAAGTT CAGTTGGGTG TTCAATAGGG AACTGCTTTT GTGA

>Vigan.03G216100.01
MQIPPCNSIT TQTLVPRAYT TSSCHRHLLP PPKAAVSAVC TASLKARRTH SMPPEKMEVF KSLEGWASEW VLPLLKPVEQ
CWQPQNLVPD SSLPFEEFSE EVKALRERTK ELPDEYFVVL VGDMVTEDAL PTYQTMINNL DGVKDDCGTS PSPWAVWTRA
WTAEENRHGD LLRTYLYLSG RVDMAKVEKT VHYLIGAGMD PGTENNPYLG FVYTSFQERA TFVAHGNTAR LAKEGGDPVL
ARICGTIAAD EKRHENAYSR IVEKLLEVDP SGAMLAIGNM MEKKITMPAH LMYDGDDPKL FEHYSAVAQR MGVYTANDYA
DILEFLVGRW RLEKLEGLTG EGKRAQDYVC GLAPRIRKLQ ERADERARKM KAQSVKFSWV FNRELLL*