GBrowse Details

Vigan.03G221500.01

Basic Information:
Name: Vigan.03G221500.01
Multiple alignment
Variant Information
Position: Chr03:35305564..35307530 (+ strand)
Length: 1967
Functional Information:
Description: Similar to peroxidase 45-like. [XP_004498581.1, Cicer arietinum]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: peroxidase activity (GO:0004601)
Molecular Function: heme binding (GO:0020037)
InterPro: Plant peroxidase (IPR000823)
Haem peroxidase, plant/fungal/bacterial (IPR002016)
Haem peroxidase (IPR010255)
Peroxidases heam-ligand binding site (IPR019793)
Peroxidase, active site (IPR019794)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.05,3.20,0.00,0.27,331.55,0.66,0.00
Automatic updates:
Name: NM_001254627 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxidase 16-like (LOC100793327), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:35305564..35305591 (+ strand)
Length: 28
Type: five_prime_UTR
Position: Chr03:35305592..35305801 (+ strand)
Length: 210
Type: CDS
Position: Chr03:35305911..35306108 (+ strand)
Length: 198
Type: CDS
Position: Chr03:35306491..35306656 (+ strand)
Length: 166
Type: CDS
Position: Chr03:35306925..35307331 (+ strand)
Length: 407
Type: CDS
Position: Chr03:35307332..35307530 (+ strand)
Length: 199
Type: three_prime_UTR


>Vigan.03G221500.01
CAGACACTGG AACTGCAACA AAGTGAAAAT GAGTTCTCAA AGCCTCATTT TGCATGCTAA TGTGTTTCTT CTTCTGCTTA
TAGCTGGTTG TCATGCTCAA CTTCGAGTTG ACTACTACAG AAACACATGT CCAAATGTTG AATCGATTGT TCGGAGAGCA
GTTGAGATGA AACTTCAGCA GACAGATGTG ACAGTTCCTG CTACACTTAG GCTGTTCTTC CATGATTGTT TTGTTAGGGG
GTGTGATGCT TCTGTGATGC TAGCTTCAAC AAACCACACA TCTGAGAAGG ATAATCCTAT AGATCTTTCA CTAGCTGGTG
ATGGATTTGA CACTGTGATC AAAGCCAAGG CTGCAGTTGA CAGTGTACCT GGCTGCCAGA ATAAGGTTTC ATGTTCTGAC
ATTTTGGCAA TGGCAACTAG GGATGTCATA GCTCTGGCAG GAGGACCATC TTATGCAGTA GAGCTGGGAA GGCTAGATGG
GAGAGTCTCA ACAAAAGGAA GTGTTACAGA CCATATACCC GATCCTGATT TAAAGCTAGA ACAACTGAAC CAAATGTTTG
CTTCACATGG ACTAACCCAA ACTGATCTAG TTGCTCTATC AGGAGCACAT ACCGTTGGAT TCTCTCATTG TGACCAGTTC
TCCAAACGTA TTTACAACTT CAAAGGCAAT AAAAGCATTG ATCATACACT TAATCCTGCG TATGCAATAC AGCTCCAACA
AGACTGTCCA AAAAATGCCG ACCCCGAAAC AGTCGTTCAA ATGGACCCAA TAACACCAAA GATATTTGAT AATCAATACT
ACAAGAATCT TCAGCAAGGA AAAGGGCTTC TCGCTTCTGA TCAAGCTTTG TTTACTCATA AAAGAACAAG AGAGCTAGTG
AACTTATTTG CATCCAACAA CACAGTCTTT GAAACGTCTT TTGTAAGTGC CATAACAAAG TTAGGACGAA TAGGGATTAA
AACAGGAAAC CAGGGTGAAA TCCGGCGTGA TTGCTCGATG GTTAACTGAG CTACTAATTG TGACCATGTT CAGATCATTC
TGAAATAATC TTATTAATTT CTTCTATTTG TTTGTTTTGG GTTAATGAAT ACTAAAATTA CAGTCAAATT CAGCTTGGTA
GAATTCTGAT TCTGCAATAG TTTCAGAAGA GACTAGTCGT TTTCGGATGC TTTCAATTCA ATTTAATTCA AGCAATCAAA
GATTTATT

>Vigan.03G221500.01
ATGAGTTCTC AAAGCCTCAT TTTGCATGCT AATGTGTTTC TTCTTCTGCT TATAGCTGGT TGTCATGCTC AACTTCGAGT
TGACTACTAC AGAAACACAT GTCCAAATGT TGAATCGATT GTTCGGAGAG CAGTTGAGAT GAAACTTCAG CAGACAGATG
TGACAGTTCC TGCTACACTT AGGCTGTTCT TCCATGATTG TTTTGTTAGG GGGTGTGATG CTTCTGTGAT GCTAGCTTCA
ACAAACCACA CATCTGAGAA GGATAATCCT ATAGATCTTT CACTAGCTGG TGATGGATTT GACACTGTGA TCAAAGCCAA
GGCTGCAGTT GACAGTGTAC CTGGCTGCCA GAATAAGGTT TCATGTTCTG ACATTTTGGC AATGGCAACT AGGGATGTCA
TAGCTCTGGC AGGAGGACCA TCTTATGCAG TAGAGCTGGG AAGGCTAGAT GGGAGAGTCT CAACAAAAGG AAGTGTTACA
GACCATATAC CCGATCCTGA TTTAAAGCTA GAACAACTGA ACCAAATGTT TGCTTCACAT GGACTAACCC AAACTGATCT
AGTTGCTCTA TCAGGAGCAC ATACCGTTGG ATTCTCTCAT TGTGACCAGT TCTCCAAACG TATTTACAAC TTCAAAGGCA
ATAAAAGCAT TGATCATACA CTTAATCCTG CGTATGCAAT ACAGCTCCAA CAAGACTGTC CAAAAAATGC CGACCCCGAA
ACAGTCGTTC AAATGGACCC AATAACACCA AAGATATTTG ATAATCAATA CTACAAGAAT CTTCAGCAAG GAAAAGGGCT
TCTCGCTTCT GATCAAGCTT TGTTTACTCA TAAAAGAACA AGAGAGCTAG TGAACTTATT TGCATCCAAC AACACAGTCT
TTGAAACGTC TTTTGTAAGT GCCATAACAA AGTTAGGACG AATAGGGATT AAAACAGGAA ACCAGGGTGA AATCCGGCGT
GATTGCTCGA TGGTTAACTG A

>Vigan.03G221500.01
MSSQSLILHA NVFLLLLIAG CHAQLRVDYY RNTCPNVESI VRRAVEMKLQ QTDVTVPATL RLFFHDCFVR GCDASVMLAS
TNHTSEKDNP IDLSLAGDGF DTVIKAKAAV DSVPGCQNKV SCSDILAMAT RDVIALAGGP SYAVELGRLD GRVSTKGSVT
DHIPDPDLKL EQLNQMFASH GLTQTDLVAL SGAHTVGFSH CDQFSKRIYN FKGNKSIDHT LNPAYAIQLQ QDCPKNADPE
TVVQMDPITP KIFDNQYYKN LQQGKGLLAS DQALFTHKRT RELVNLFASN NTVFETSFVS AITKLGRIGI KTGNQGEIRR
DCSMVN*