VIGGS:GBrowse

Vigan.03G230000.01

Basic Information:

Name:	Vigan.03G230000.01 Multiple alignment Variant Information
Position:	Chr03:36273606..36276257 (+ strand)
Length:	2652

Functional Information:

Description:	Similar to Cytochrome b-c1 complex subunit 7. [I3SRU8, Lotus japonicus]
GO:	Biological Process: mitochondrial electron transport, ubiquinol to cytochrome c (GO:0006122)
GO:	Cellular Component: mitochondrial respiratory chain complex III (GO:0005750)
InterPro:	Cytochrome b-c1 complex subunit 7 (IPR003197)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:124.27,68.40,156.96,123.81,210.92,355.05,171.12,128.94
Arabidopsis thaliana homolog:	AT5G25450.1

Automatic updates:

Name:	NM_001250210 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499867 (LOC100499867), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:36273606..36273776 (+ strand)
Length:	171
Type:	five_prime_UTR

Position:	Chr03:36273777..36273870 (+ strand)
Length:	94
Type:	CDS

Position:	Chr03:36273960..36274117 (+ strand)
Length:	158
Type:	CDS

Position:	Chr03:36274790..36274837 (+ strand)
Length:	48
Type:	CDS

Position:	Chr03:36276029..36276097 (+ strand)
Length:	69
Type:	CDS

Position:	Chr03:36276098..36276257 (+ strand)
Length:	160
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G230000.01
GATAAATTGG CAATTGAAGG AATAAACGAC ACGTCGTTGG GTAAAAGTAA TAGTCGTAGA CGCAAAGAGC GGTGTGGTGC
AAAATAAGAA GCACTTCTGT TACTCTTCTT CTGTGATTAT TCGAAAAACT CTAACGAAAG AGCGAGAAAG AAAGCGAAGA
GAGCAATTGC AATGGCGTCG TTTGTTCAAT CTATTCTGGA TCCAAAGAAG AGCTGGTTCG CCGCTCAGCA CATGAAATCC
CTCGTCAAAC GCCTCAGCAA ATACGGGCTC CGATACGACG ATTTGTACGA TCCTTACTAC GATCTGGATG TGAAGGAGGC
GCTGAATCGG CTCCCGAAGG AGGTGGTGGA CGCCCGCCAC GCTCGTCTCA AACGCGCCAT CGACCTTTCC ATGAAGCACG
AGTACCTCCC TGACGATCTT CAGGCTATGC AAACACCGTT CAGGGGCTAC CTTCAGGATA TGCTGGCTCT TGTGAAGAGG
GAGAGAGCAG AACGTGAAGC ATTGGGAGGT TTACCCCTAT ATCAACGATC TATTCCTTGA GTGAATTAAG TATTGCATGA
AGGTATTTTG ATTGAAGTGG AGGTTTACAA TGTATTGATG TTTGTGGTAG AATGTTTTCT TTTAAGAAGA AAACATGTAC
GGTTTCTTGA TAAACTTATA TGAAATGCAT TTTTTGATGG TATAAACTTG CCTCAGTAGG

[show][hide][copy]CDS

>Vigan.03G230000.01
ATGGCGTCGT TTGTTCAATC TATTCTGGAT CCAAAGAAGA GCTGGTTCGC CGCTCAGCAC ATGAAATCCC TCGTCAAACG
CCTCAGCAAA TACGGGCTCC GATACGACGA TTTGTACGAT CCTTACTACG ATCTGGATGT GAAGGAGGCG CTGAATCGGC
TCCCGAAGGA GGTGGTGGAC GCCCGCCACG CTCGTCTCAA ACGCGCCATC GACCTTTCCA TGAAGCACGA GTACCTCCCT
GACGATCTTC AGGCTATGCA AACACCGTTC AGGGGCTACC TTCAGGATAT GCTGGCTCTT GTGAAGAGGG AGAGAGCAGA
ACGTGAAGCA TTGGGAGGTT TACCCCTATA TCAACGATCT ATTCCTTGA

[show][hide][copy]PROTEIN

>Vigan.03G230000.01
MASFVQSILD PKKSWFAAQH MKSLVKRLSK YGLRYDDLYD PYYDLDVKEA LNRLPKEVVD ARHARLKRAI DLSMKHEYLP
DDLQAMQTPF RGYLQDMLAL VKRERAEREA LGGLPLYQRS IP*