GBrowse Details

Vigan.03G242000.01

Basic Information:
Name: Vigan.03G242000.01
Multiple alignment
Variant Information
Position: Chr03:37713089..37722411 (+ strand)
Length: 9323
Functional Information:
Description: Similar to G-protein coupled receptor 1-like isoform X1. [XP_004498837.1, Cicer arietinum]
GO: Biological Process: cell surface receptor signaling pathway (GO:0007166)
Cellular Component: membrane (GO:0016020)
Molecular Function: transmembrane signaling receptor activity (GO:0004888)
InterPro: GPCR, family 2-like (IPR017981)
G protein-coupled receptor GCR1 putative (IPR022340)
GCR1-cAMP receptor (IPR022343)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.16,29.33,16.05,16.14,16.31,20.17,23.18,17.15
Arabidopsis thaliana homolog: AT1G48270.1
Automatic updates:
Name: KM399182 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max G-protein coupled receptor 1 mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM399200 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris G-protein coupled receptor 1 mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:37713089..37713229 (+ strand)
Length: 141
Type: five_prime_UTR
Position: Chr03:37713230..37713412 (+ strand)
Length: 183
Type: CDS
Position: Chr03:37714458..37714489 (+ strand)
Length: 32
Type: CDS
Position: Chr03:37714568..37714737 (+ strand)
Length: 170
Type: CDS
Position: Chr03:37715007..37715101 (+ strand)
Length: 95
Type: CDS
Position: Chr03:37715927..37716028 (+ strand)
Length: 102
Type: CDS
Position: Chr03:37716124..37716180 (+ strand)
Length: 57
Type: CDS
Position: Chr03:37716954..37717097 (+ strand)
Length: 144
Type: CDS
Position: Chr03:37718195..37718265 (+ strand)
Length: 71
Type: CDS
Position: Chr03:37721739..37721844 (+ strand)
Length: 106
Type: CDS
Position: Chr03:37721845..37722411 (+ strand)
Length: 567
Type: three_prime_UTR


>Vigan.03G242000.01
TGTTAATTTA TTTTTACTAA AAAAACACAA AATTTCAAAA AGGTTCGGCT TTCTCCTTTG TTTCTCTTCC TTTGCCAGTG
AGTTAGAACT TGAGAATCAA GAGAGTGACT ACTGATCGGC GATAACGACT AGTTCCGTGT AATGGCGGCC TCCGTCGCAC
ACGGCGGTAC TCTCACTGCG CACGATCGCC AGATTCTGAC GGCGGTGAAC GCCGGAGCGT CGAGTCTGTC GTTGGCCGGT
TCCACCTTCA TTGTACTCTG CTACCTTCTC TTCAAGGAGC TTCGCAAGTT CTCCTTCAAG CTTGTTTTCT ACCTCGCTCT
CGCTGATATG CTTTGCAGTT TCTTCAGCAT AATAGGGGAC CCGTTCAAAG GTTTATTTTG TTATGCTCAG GGCTATAGCA
CACATTTCTT TTGTGTGGCA TCTTTTCTGT GGACTACAAC AATTGCTTTT ACCCTGCACC GCACTGTTGT AAAACACAAA
ACTGATGTTG AAGATTTAGA GGCCATGTTT CACTTGTTTG TCTGGGGTAC TTCCTTGGTT ATGACTGTTA TGCGCTCTAT
CGGTAATGAC CATAGACATT TAGGTGCATG GTGTTGGACT CAAACAGGTC GCACAGGGAA GGCGGTTCAT TTTGTAACAT
TTTACATGCC ACTCTGGGGT GCAATTCTGT ATAATGGGTT CACATACTTT CAAGTAATTC GCATGCTGAA TAATGCAACC
CGTATGGCGG TTGGTATGTC AAGCCAAACT TTCGTGTCAG ATACAAGAGA TAACATGAGG GCTCTGAATC GCTGGGGATA
CTATCCACTA ATTCTGATTG GATCATGGGC TTTTGGAACT ATTAACCGTA TTCATGATTT TTTTGAACCC AACCATAAAA
TCTTTTGGCT CACATTTCTT GATGTTGGAA CAGCTGCTCT TATGGGCCTC TTTAACTCAA TTGCTTATGG TCTCAACTCT
TCTGTACGTC GGGCAATTTG TGAAAGACTG GACAAGTTCT GGCCTGAGAG ATTATCCAGA TGGCTCCCTA ACAATTTGAA
GTATAAGAAT CTACAGCAAG AAAGTGAACT AGTTTTGTTC AAAACGGAAG AAGATCAATA ACAGTGAATG GGACATATTG
TGATCCTTCA TACCATGTGA CATTTCTTAT TCTAGTTTAC TGAGAGGCTG TTTTTATAGA CAACGTATGA TCTGCGGGCA
GCAAAGATTC CAGGCTGTTT GTTGCTCTGC TGCTTCAATT ATGTGAACCC TGGCATTCGT CACTGAATTT ATGGTGCTGG
TGATCCTTTT CTAGCATATC ACAGGATGGA AAACTTAATT TGGAACCTGC TTCAGCTAGT TGAAGACTTC TTGGGACTAC
AGAAAATGCT TTTATCGTTT TAGCAAGTCT CAACCTCTCA TGTGATTTAT CTTTAAGAAG TCTTGACATA TAGGATCACT
GTATGTATAG GTTAGATGCA CTTACAGATT GTTTCAAATT GCTGAACATT TTCCCCCCTA AATTTGCTGT GTATGTAGTC
TCAACCTATA AAGTATTAAG TTTTAAACAC ATGCCCATAT CTTTTCTTTA TTCTTTTTTC CATATGTATA GTTTATTCTA
ACCGAAAATA AAATCATTTA GGTTTTGTAT CTGGACAACA AAAGGAATAA ATTCCCCTGA AGTTGATG

>Vigan.03G242000.01
ATGGCGGCCT CCGTCGCACA CGGCGGTACT CTCACTGCGC ACGATCGCCA GATTCTGACG GCGGTGAACG CCGGAGCGTC
GAGTCTGTCG TTGGCCGGTT CCACCTTCAT TGTACTCTGC TACCTTCTCT TCAAGGAGCT TCGCAAGTTC TCCTTCAAGC
TTGTTTTCTA CCTCGCTCTC GCTGATATGC TTTGCAGTTT CTTCAGCATA ATAGGGGACC CGTTCAAAGG TTTATTTTGT
TATGCTCAGG GCTATAGCAC ACATTTCTTT TGTGTGGCAT CTTTTCTGTG GACTACAACA ATTGCTTTTA CCCTGCACCG
CACTGTTGTA AAACACAAAA CTGATGTTGA AGATTTAGAG GCCATGTTTC ACTTGTTTGT CTGGGGTACT TCCTTGGTTA
TGACTGTTAT GCGCTCTATC GGTAATGACC ATAGACATTT AGGTGCATGG TGTTGGACTC AAACAGGTCG CACAGGGAAG
GCGGTTCATT TTGTAACATT TTACATGCCA CTCTGGGGTG CAATTCTGTA TAATGGGTTC ACATACTTTC AAGTAATTCG
CATGCTGAAT AATGCAACCC GTATGGCGGT TGGTATGTCA AGCCAAACTT TCGTGTCAGA TACAAGAGAT AACATGAGGG
CTCTGAATCG CTGGGGATAC TATCCACTAA TTCTGATTGG ATCATGGGCT TTTGGAACTA TTAACCGTAT TCATGATTTT
TTTGAACCCA ACCATAAAAT CTTTTGGCTC ACATTTCTTG ATGTTGGAAC AGCTGCTCTT ATGGGCCTCT TTAACTCAAT
TGCTTATGGT CTCAACTCTT CTGTACGTCG GGCAATTTGT GAAAGACTGG ACAAGTTCTG GCCTGAGAGA TTATCCAGAT
GGCTCCCTAA CAATTTGAAG TATAAGAATC TACAGCAAGA AAGTGAACTA GTTTTGTTCA AAACGGAAGA AGATCAATAA


>Vigan.03G242000.01
MAASVAHGGT LTAHDRQILT AVNAGASSLS LAGSTFIVLC YLLFKELRKF SFKLVFYLAL ADMLCSFFSI IGDPFKGLFC
YAQGYSTHFF CVASFLWTTT IAFTLHRTVV KHKTDVEDLE AMFHLFVWGT SLVMTVMRSI GNDHRHLGAW CWTQTGRTGK
AVHFVTFYMP LWGAILYNGF TYFQVIRMLN NATRMAVGMS SQTFVSDTRD NMRALNRWGY YPLILIGSWA FGTINRIHDF
FEPNHKIFWL TFLDVGTAAL MGLFNSIAYG LNSSVRRAIC ERLDKFWPER LSRWLPNNLK YKNLQQESEL VLFKTEEDQ*