GBrowse Details

Vigan.03G243300.01

Basic Information:
Name: Vigan.03G243300.01
Multiple alignment
Variant Information
Position: Chr03:37987752..37993091 (- strand)
Length: 5340
Functional Information:
Description: Similar to protein phosphatase 2C 59 isoform X3. [XP_006596058.1, Glycine max]
GO: Biological Process: protein dephosphorylation (GO:0006470)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: protein serine/threonine phosphatase activity (GO:0004722)
InterPro: Protein phosphatase 2C, manganese/magnesium aspartate binding site (IPR000222)
Protein phosphatase 2C (PP2C)-like domain (IPR001932)
Protein phosphatase 2C (IPR015655)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.44,17.90,24.82,17.73,17.75,29.95,17.83,17.97
Automatic updates:
Name: NM_001255861 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable protein phosphatase 2C 59-like (LOC100807396), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:37987752..37988835 (- strand)
Length: 1084
Type: three_prime_UTR
Position: Chr03:37988836..37989102 (- strand)
Length: 267
Type: CDS
Position: Chr03:37989611..37989702 (- strand)
Length: 92
Type: CDS
Position: Chr03:37989788..37989874 (- strand)
Length: 87
Type: CDS
Position: Chr03:37990599..37990757 (- strand)
Length: 159
Type: CDS
Position: Chr03:37990873..37990971 (- strand)
Length: 99
Type: CDS
Position: Chr03:37991488..37991615 (- strand)
Length: 128
Type: CDS
Position: Chr03:37992273..37992481 (- strand)
Length: 209
Type: CDS
Position: Chr03:37992482..37993091 (- strand)
Length: 610
Type: five_prime_UTR


>Vigan.03G243300.01
TTTTAAACTC TTACTTACTA CATTTTATTC AATCGAAATA AATACGATTT TGTTTGAAAG AAAAAGAAAT TTTCTGATTT
CAATTGGTTT CTCATTAAAC TCAGAAATTT CAAAAAAGTT TTTTGGATGT AAATTATGAG TTAATTTACG AAAAGATGGT
GTTTGAATTC GTTGAACAAG ATTGTTGGTG GAACAAACAA AACCATGAAG CTAACTTGAA CTACAAATGA AACAGAATCC
ACCCTGTTTT CTCACCCTTG CTGTAACCTC TTCTCCTTTC TCTCTCTTCT TTGTGTCATG CAATTTCTTC CCTGTTCTCT
TTATAGGGTA CTTTCCCTCT TTGTCTCTCT CCCTAACTGC AGGGTTTACC GTGTTCAATA ATTATTCTCA CCAAATCCCA
ACTCAGTTCT GAATTTGATT TGGTTAACGA TACCAAGATC CAAGCATAAA TTTTTTTTTT TATCCTTTTG GGTGGAACAA
AGTTGGAGCC TTTTTCCGAA ATTTATCTGC TTTGTGATAT TAACTGCACT CTCTTCCTTG TGGGGTTTCT GTGCAGATTA
AACTTGGGAT TGTTTGATTA TTCCGAAATG ACCCCACACC ACTTAGTGTT ATGATAACTT GGAACCTGTT GCACGCAAGA
ATAAGTTGGA CACACGCAAT AGCGCTATTA TTTCTTCATT TTTTGTTGTT GGTCAAAGAA ATAGTACCTG GGAGCCCTGA
ATATTCAAGC TGTGATATGG GGTACCTCAA TTCAGTCTTA TCCTCTTCAG GCCAGGTTCA TGCCACAGAA GATTCACCTG
TCAGCGGAGG GGGCCTCAGT CAGAATGGCA AATTCAGCTA TGGGTATGCT AGCTCCCCTG GCAAGAGATC ATCAATGGAA
GATTTTTATG AGACAAAAAT TGATGGCGTT GATGGTGAAA TTGTTGGCCT TTTTGGAGTT TTTGATGGTC ATGGAGGTGC
TCGTGCTGCC GAGTATGTCA AGCAAAACCT GTTTAGCAAT TTGATCAGAC ATCCAAAATT CATTTCTGAC ACCAAATCTG
CTATAGCTGA TGCATATAAC CATACCGACT CTGAATTTCT GAAATCTGAA AATAATCAAA ACAGAGATGC TGGATCAACT
GCTTCCACAG CCATTCTTGT CGGAGATCGA TTGCTTGTTG CAAATGTTGG GGATTCCAGA GCTGTTATAT GCAGGGGTGG
AAATGCCATT GCTGTTTCCC GAGATCACAA GCCGGACCAA ACTGATGAGA GACGAAGGAT TGAAGATGCA GGTGGCTTTG
TTATGTGGGC TGGAACTTGG AGAGTTGGTG GCGTTCTTGC TGTTTCTCGT GCATTTGGTG ATAGACTCCT GAAGCAGTAT
GTTGTTGCTG ATCCAGAAAT CCAGGAAGAA AAGGTTGATA GCTCTCTTGA GTTTCTCATA TTGGCCAGTG ATGGGCTATG
GGATGTTGTC TCAAATGAGG TTTGCAACTA TTTTCATTTC TTTCATGTTA GAAACCAAAC TAGAGACCTA GGGCTCATTC
TGAAATTCTG TGCCACACAC GCAGGTTCAT TGTTACGGAT AGGTTTTTTT CTTCTGAGGG AGTTCATTAC GAAGATATTA
TATACATGTA ACATGAGCGT AACCAACTTA AGGAATAGAC ACAATTTTTA ACCTAAAATC TCTAAGCATT TTAAGGCTTA
TTTTTATTCA ATGTGAGACT TAAACTCATA TTTAGATTGT TTCCAACAAT TATCACTGAA AATATGATGA CCTCTACATG
ATGTGTTGTT CAAGAAAATT GGCTATCATA TTCCTAGAAA AGTTCAAGAC CAAACTTATG AATTTGTAAA CTCAGAAGTC
CAAGTCATGT AGTCGTGCTA CTCATCTAAA TCTCATAATG TTATCACCTT TATTCAGGAA GCTGTTTCCA TGATTAAACC
GATTCAGGAC GCGGAGGAGG CAGCAAAGAG ACTGATGCAA GAAGCATACC AGAGAGGTAG TTCTGACAAC ATTACATGCG
TGGTTGTTCG TTTCTTGTCG AATCAAGGTG CTTCTTCTCA CAGTAACTCT GGCTAAGTGT TGTATTAGAA GAGCAGTGTG
TATCTGGAGA CAGATAAGAA AAGGTGGGAC GAGGCAAAAT CAGTTTGTTA TAGTTGGTGA GAGACATTCC TTGTAGCTGT
GTACCATGCA AGAACAGAAA TCAAATTTGA ACTCACTATG GTCCTCTAGC ATAGATGTTT TCACATTCAA ACCATTTCAC
TCCATAATTG AGTCCTATTT GTAGGGAGGA AAAAATAGCA GTGCAAAGAG TTTACAGTGT TTGAATTGCT CACACATGAC
ATGATGTTTG TAAATGTGGG ATTGATCCTA TTAATCCCCT CTCTCCCAAA CAAACTACTA GTGTGCTTGG TTGAACTTAT
GTTCCCTTTT CATTCTTAAT CTGGTTTTAC AGTGTTAGTC CCATCCCATC CCATGTAACA CCCACACTCA TGTTCTACTC
TAATAGTGGC TTTCATCAAC TGTATAATAA TGTCAATCTA CTTAGAAACA ATCTTCTTTC TCTTTTTCTT TTCTCACTAT
TTTTCAACTG TTTATAGCAT ATGCATGAAT GGATTTAGAT TATCTAGATT TTGCAAAATA ACTTTTGATT AAGATTGGGT
TTCAAAATAA GGTGAAATAT TTATTTAAAC ACAGGGACTA AAATGATGTT CCATTCAAAA TTTCAAGTTT GATTTTATAT
TATCAAACAT ATTTT

>Vigan.03G243300.01
ATGATAACTT GGAACCTGTT GCACGCAAGA ATAAGTTGGA CACACGCAAT AGCGCTATTA TTTCTTCATT TTTTGTTGTT
GGTCAAAGAA ATAGTACCTG GGAGCCCTGA ATATTCAAGC TGTGATATGG GGTACCTCAA TTCAGTCTTA TCCTCTTCAG
GCCAGGTTCA TGCCACAGAA GATTCACCTG TCAGCGGAGG GGGCCTCAGT CAGAATGGCA AATTCAGCTA TGGGTATGCT
AGCTCCCCTG GCAAGAGATC ATCAATGGAA GATTTTTATG AGACAAAAAT TGATGGCGTT GATGGTGAAA TTGTTGGCCT
TTTTGGAGTT TTTGATGGTC ATGGAGGTGC TCGTGCTGCC GAGTATGTCA AGCAAAACCT GTTTAGCAAT TTGATCAGAC
ATCCAAAATT CATTTCTGAC ACCAAATCTG CTATAGCTGA TGCATATAAC CATACCGACT CTGAATTTCT GAAATCTGAA
AATAATCAAA ACAGAGATGC TGGATCAACT GCTTCCACAG CCATTCTTGT CGGAGATCGA TTGCTTGTTG CAAATGTTGG
GGATTCCAGA GCTGTTATAT GCAGGGGTGG AAATGCCATT GCTGTTTCCC GAGATCACAA GCCGGACCAA ACTGATGAGA
GACGAAGGAT TGAAGATGCA GGTGGCTTTG TTATGTGGGC TGGAACTTGG AGAGTTGGTG GCGTTCTTGC TGTTTCTCGT
GCATTTGGTG ATAGACTCCT GAAGCAGTAT GTTGTTGCTG ATCCAGAAAT CCAGGAAGAA AAGGTTGATA GCTCTCTTGA
GTTTCTCATA TTGGCCAGTG ATGGGCTATG GGATGTTGTC TCAAATGAGG TTTGCAACTA TTTTCATTTC TTTCATGTTA
GAAACCAAAC TAGAGACCTA GGGCTCATTC TGAAATTCTG TGCCACACAC GCAGGTTCAT TGTTACGGAT AGGTTTTTTT
CTTCTGAGGG AGTTCATTAC GAAGATATTA TATACATGTA ACATGAGCGT AACCAACTTA AGGAATAGAC ACAATTTTTA
A

>Vigan.03G243300.01
MITWNLLHAR ISWTHAIALL FLHFLLLVKE IVPGSPEYSS CDMGYLNSVL SSSGQVHATE DSPVSGGGLS QNGKFSYGYA
SSPGKRSSME DFYETKIDGV DGEIVGLFGV FDGHGGARAA EYVKQNLFSN LIRHPKFISD TKSAIADAYN HTDSEFLKSE
NNQNRDAGST ASTAILVGDR LLVANVGDSR AVICRGGNAI AVSRDHKPDQ TDERRRIEDA GGFVMWAGTW RVGGVLAVSR
AFGDRLLKQY VVADPEIQEE KVDSSLEFLI LASDGLWDVV SNEVCNYFHF FHVRNQTRDL GLILKFCATH AGSLLRIGFF
LLREFITKIL YTCNMSVTNL RNRHNF*