GBrowse Details

Vigan.03G244900.01

Basic Information:
Name: Vigan.03G244900.01
Multiple alignment
Variant Information
Position: Chr03:38106060..38116406 (+ strand)
Length: 10347
Functional Information:
Description: Similar to uncharacterized LOC101210123. [XP_004157100.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.57,8.65,9.12,21.30,18.16,16.03,16.05,8.93
Arabidopsis thaliana homolog: AT2G24970.1
Automatic updates:
Name: NM_001251419 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SKA2 domain-containing protein (LOC100500198), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:38106060..38106170 (+ strand)
Length: 111
Type: five_prime_UTR
Position: Chr03:38106171..38106293 (+ strand)
Length: 123
Type: CDS
Position: Chr03:38106431..38106526 (+ strand)
Length: 96
Type: CDS
Position: Chr03:38106795..38106917 (+ strand)
Length: 123
Type: CDS
Position: Chr03:38111792..38111831 (+ strand)
Length: 40
Type: CDS
Position: Chr03:38115872..38115945 (+ strand)
Length: 74
Type: CDS
Position: Chr03:38115946..38116406 (+ strand)
Length: 461
Type: three_prime_UTR


>Vigan.03G244900.01
ATTTTGAATT TTTTCTTACA TTTTCGTGTC TAGATAGATT GAAACTGTGC GTATTTTCAA AAGTACGATG ACCATTTGAA
TCTCAATTCA GCACTGCAGC GTGAAGCCAA AATGGAGCAT CAATACCACC AAGCAACAGA TGGGCTTTTG AACCTTTTCA
CAAAGGCCAA TCACGATCTC TCTACAGTTC ACCATCGCCT CGAAAAGGAG TTTCTGCAGG TTTACCCTGA CAATGCTAAC
CCCATGAAGC TGGTTTCTAG AATCAAGAAG CTTCAGGATG ATATAGCAAC CTTGAAGGGG CAGTGCCATG AGCTTCTGGC
TGCTAAGCAG GATTTGATTG ATCAGGCTCA GAGGATTCTG GTGGAGAACA GGAATTTGGT GCAGCGAATG CAACCATCCA
TGGGCATCTT CTCCACTGGT GAAGATGATG CTGCATTCAC TAACTTCAAA CAGGTAATTG AAGAATGGAC AGCTCAAGTA
AGATCCAAAA CAGGGAATGA GACACATGAT GCTGATTCTG GAGATATCAA CAAACTGCTT TTCTCTGCTA TAGTTCAAAG
TAACTGATCT GCTATCACCA GGATAGTAAT GTAGTATGCA TCTAGCAGTT TACTTAAAAT GTAAAGAAAC AGAGTCAGGG
TAGTGAAAGT AAATCATTAA TTGAATTGCA TTATTCAAGA TATATATTGC ATGCAAACGT TACACTAAAA GGATAAACAA
GTTAAACGCT TCACGTATAT TTTTGTATTT AGAGATTTAG CTTGAGCCAA GAACCTTAAT TGTAGAAGTG ACAGGGTCAC
TAAATGTTGA TTTATGCAGG TATGATGTGT TTGATTAAAT TTGACTTGTG TGAGATATGT TGAGTATTTT GGACCGTCTA
ATTTATGATC AATTGAGTCT AATTTGTTCA ATTTGATGTT ATTTTGAACT AAATATATCA ATTTTGACAT AATAAATGAA
GAGAAAAAGG CAATCTGAGT CAATTTGATC AATTGATTTG TCCTTAGAGT GTTCTGAATT ATATAGAC

>Vigan.03G244900.01
ATGGAGCATC AATACCACCA AGCAACAGAT GGGCTTTTGA ACCTTTTCAC AAAGGCCAAT CACGATCTCT CTACAGTTCA
CCATCGCCTC GAAAAGGAGT TTCTGCAGGT TTACCCTGAC AATGCTAACC CCATGAAGCT GGTTTCTAGA ATCAAGAAGC
TTCAGGATGA TATAGCAACC TTGAAGGGGC AGTGCCATGA GCTTCTGGCT GCTAAGCAGG ATTTGATTGA TCAGGCTCAG
AGGATTCTGG TGGAGAACAG GAATTTGGTG CAGCGAATGC AACCATCCAT GGGCATCTTC TCCACTGGTG AAGATGATGC
TGCATTCACT AACTTCAAAC AGGTAATTGA AGAATGGACA GCTCAAGTAA GATCCAAAAC AGGGAATGAG ACACATGATG
CTGATTCTGG AGATATCAAC AAACTGCTTT TCTCTGCTAT AGTTCAAAGT AACTGA

>Vigan.03G244900.01
MEHQYHQATD GLLNLFTKAN HDLSTVHHRL EKEFLQVYPD NANPMKLVSR IKKLQDDIAT LKGQCHELLA AKQDLIDQAQ
RILVENRNLV QRMQPSMGIF STGEDDAAFT NFKQVIEEWT AQVRSKTGNE THDADSGDIN KLLFSAIVQS N*