GBrowse Details

Vigan.03G245100.01

Basic Information:
Name: Vigan.03G245100.01
Multiple alignment
Variant Information
Position: Chr03:38118796..38124994 (+ strand)
Length: 6199
Functional Information:
Description: Similar to Monogalactosyldiacylglycerol synthase type A. [Q07A03, Vigna unguiculata]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: glycolipid biosynthetic process (GO:0009247)
Biological Process: lipid glycosylation (GO:0030259)
Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758)
Molecular Function: carbohydrate binding (GO:0030246)
InterPro: Glycosyl transferase, family 28, C-terminal (IPR007235)
Diacylglycerol glucosyltransferase, N-terminal (IPR009695)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.14,6.17,7.01,10.64,8.39,4.85,5.05,5.59
Arabidopsis thaliana homolog: AT4G31780.2
Automatic updates:
Name: NM_001250001 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max monogalactosyldiacylglycerol synthase 1 (MGD1), mRNA; nuclear gene for chloroplast product.
PubMed ID: 11553816 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:38118796..38119229 (+ strand)
Length: 434
Type: five_prime_UTR
Position: Chr03:38119230..38119730 (+ strand)
Length: 501
Type: CDS
Position: Chr03:38120627..38120799 (+ strand)
Length: 173
Type: CDS
Position: Chr03:38121396..38121557 (+ strand)
Length: 162
Type: CDS
Position: Chr03:38121646..38121787 (+ strand)
Length: 142
Type: CDS
Position: Chr03:38122770..38122994 (+ strand)
Length: 225
Type: CDS
Position: Chr03:38123570..38123632 (+ strand)
Length: 63
Type: CDS
Position: Chr03:38123710..38123784 (+ strand)
Length: 75
Type: CDS
Position: Chr03:38124428..38124664 (+ strand)
Length: 237
Type: CDS
Position: Chr03:38124665..38124994 (+ strand)
Length: 330
Type: three_prime_UTR


>Vigan.03G245100.01
TAACTACTCT CACCTTACCC TTCAACCGAC CACCAAGGGC ACTCTATAAA TCATTCTCGT ACAATGTCGC AACAAACCTC
GTACCGCGCT AACCCAAACC AAACCTTCAA TCAAAAACCA ACCTTTGCTC AACGCTGAAA CCGTGCCTGC ATTACCAAGT
TCCTTGCGTT GCTTCACTCG CACGTGACGT GGCACTCCTC CATTGGCTCG TCACGTGACA AGCACCTTCC CAGTGTCCTC
AACCCAATCC ACATGACACA ACCCACACCA CACCATACAA CAAAAATGAC TCAAACAAAA CTCCAATAAT ACTCTATAGT
CTACGTTCTT TGCTCAATGT TTCTTCCTCT CTTAAAATTC TCAACCAATT TTGTTGTTAG TGTTAGGAAG AATTGGTAAC
GATTACTACT GATTGGTAAC AGTTTGAAGC CAGAATGAAC AACGGTGTTA GGCAAGAATC CAGTGTGCTT CTCGATTTGG
CATCGCACGT CAATCGCTTC GCCTTCGATC ATTTTCGCAC CGACACCGCT GTGCAATCCA GTTTCCTGCG CTTCAATGGC
GGAGCGGGAG CCAAACGCGG CGTTTCGCTG AGGGTGGGGG CGGCTGGAGT TAGGGTCAGG AATATTTTGA GCGAGTTTAA
TAGAGCAGTT AGGTTTCACT GCGAGAAGAT CCCGATTGGG TTCGCCTCGC TGCGAGTCGC GGAGGGCGAC GGTGGTGGTG
GTGGTGGCTG TGACGGGGAC GGGGATGGGG ATGGAAGTGG GGTTAGAGTG GATGAGTGTG GCGGGGTGGA GAATGAGGGG
CTTCGTGGGA ATGGCGTGGG GGGTGAGAGG CCCAAAAAAG TTTTGATTTT GATGAGTGAC ACTGGTGGTG GGCATCGAGC
TTCCGCTGAA GCTATCAAGG CTGCTTTCTA TGAAGAATTT GGAGATGATT ACCAGGTTTT CGTTACTGAT TTGTGGGCTG
ATCACACACC TTGGCCGTTC AACCAACTTC CCAGGAGCTA TAGCTTTTTG GTGAAGCACG GGCCATTGTG GAAGATGACT
TACTATGGAA CTGCCCCACG AGTTGTGCAC CAGTCTAATT TTGCAGCAAC TGGAACTTTC ATAGCTCGTG AGGTTGCTAA
AGGTCTAATG AAATATCAGC CAGATATAAT AATCAGTGTG CATCCATTGA TGCAGCACGT TCCACTTCGA ATTTTGAGGT
CAAAGGGTCT TTTAGATAAG ATTGTTTTTA CTACAGTTAT CACAGATTTA AGCACATGCC ATCCAACGTG GTTTCATAAG
CTCGTAACTA GATGCTATTG TCCTACGACA GATGTTGCGC AAAGGGCATT GAAAGCAGGA TTGCAGCAAT CCCAAATAAA
GATTTTTGGT CTACCTGTCC GGCCTTCCTT TGTTAAGCCT GTCCGGCCAA AGGATGAACT AAGGAGAGAT CTAGGGATGG
ATGAGGATCT TCCTGCTGTA TTATTGATGG GGGGAGGGGA AGGTATGGGT CCCATTGAGG CTACTGCTCG AGCACTTGGA
GATTCATTAT ACGACGAGAA TATTGGGGCC CCTGTAGGTC AGATCCTAGT GATCTGTGGA CGGAATAAGA AACTTCTTAA
CAAACTGACT TCTATTAATT GGAAGGTTCC TGTGCAGGTC AAGGGATTTG TTACCAAAAT GGAGGAATGC ATGGGAGCTT
GTGATTGCAT CATCACAAAG GCGGGTCCAG GGACGATTGC AGAAGCCCAG ATCAGAGGCC TCCCTATTAT TTTGAATGAT
TACATTGCTG GACAGGAAGC TGGCAATGTC CCCTATGTAG TTGAAAATGG ATGTGGAAAG TTCTCTAAAT CTCCTAAACA
GATAGCAAAA ATTGTTGCCG ATTGGTTTGG TCCTAAGGCC TACGAGCTAC AACAAATGTC ACAAAATGCA TTGAGGCTGG
CAAGGCCAGA CGCTGTGTTC AAGATTGTTC ATGACCTTCA CGAGCTGGTT AGACAAAGAA GCTACCTAGC AGAATATTCT
TGTACAGCTT AACTGATACT GAGGATATTT TTTGCACCTT TTTTTCTGAG AAAAAAATGT ATTAGGCAAC CATTTTTCTG
ATCACTACCA GAAATTCGAG TATTTGTCTT CCATCTTTAT TTTTCAGATG CTCCTTTGAA AATTTTATGT TGATATAGTT
TTGAATGTTT CTTGTTAATC AATTTTTTTC CATGTTAGGG ATACATCTCT CTTTTGGTAA CTTTACTATG AAAAACTGGA
GAAAAACTCT TCAGTGATAT GCAAAGATTT GAAGGGATTT AATACGAAAT TTTATCTTTG TCCTCCTATA ATTTGATAAT
TTCAAACTTT GTATGTACGA AA

>Vigan.03G245100.01
ATGAACAACG GTGTTAGGCA AGAATCCAGT GTGCTTCTCG ATTTGGCATC GCACGTCAAT CGCTTCGCCT TCGATCATTT
TCGCACCGAC ACCGCTGTGC AATCCAGTTT CCTGCGCTTC AATGGCGGAG CGGGAGCCAA ACGCGGCGTT TCGCTGAGGG
TGGGGGCGGC TGGAGTTAGG GTCAGGAATA TTTTGAGCGA GTTTAATAGA GCAGTTAGGT TTCACTGCGA GAAGATCCCG
ATTGGGTTCG CCTCGCTGCG AGTCGCGGAG GGCGACGGTG GTGGTGGTGG TGGCTGTGAC GGGGACGGGG ATGGGGATGG
AAGTGGGGTT AGAGTGGATG AGTGTGGCGG GGTGGAGAAT GAGGGGCTTC GTGGGAATGG CGTGGGGGGT GAGAGGCCCA
AAAAAGTTTT GATTTTGATG AGTGACACTG GTGGTGGGCA TCGAGCTTCC GCTGAAGCTA TCAAGGCTGC TTTCTATGAA
GAATTTGGAG ATGATTACCA GGTTTTCGTT ACTGATTTGT GGGCTGATCA CACACCTTGG CCGTTCAACC AACTTCCCAG
GAGCTATAGC TTTTTGGTGA AGCACGGGCC ATTGTGGAAG ATGACTTACT ATGGAACTGC CCCACGAGTT GTGCACCAGT
CTAATTTTGC AGCAACTGGA ACTTTCATAG CTCGTGAGGT TGCTAAAGGT CTAATGAAAT ATCAGCCAGA TATAATAATC
AGTGTGCATC CATTGATGCA GCACGTTCCA CTTCGAATTT TGAGGTCAAA GGGTCTTTTA GATAAGATTG TTTTTACTAC
AGTTATCACA GATTTAAGCA CATGCCATCC AACGTGGTTT CATAAGCTCG TAACTAGATG CTATTGTCCT ACGACAGATG
TTGCGCAAAG GGCATTGAAA GCAGGATTGC AGCAATCCCA AATAAAGATT TTTGGTCTAC CTGTCCGGCC TTCCTTTGTT
AAGCCTGTCC GGCCAAAGGA TGAACTAAGG AGAGATCTAG GGATGGATGA GGATCTTCCT GCTGTATTAT TGATGGGGGG
AGGGGAAGGT ATGGGTCCCA TTGAGGCTAC TGCTCGAGCA CTTGGAGATT CATTATACGA CGAGAATATT GGGGCCCCTG
TAGGTCAGAT CCTAGTGATC TGTGGACGGA ATAAGAAACT TCTTAACAAA CTGACTTCTA TTAATTGGAA GGTTCCTGTG
CAGGTCAAGG GATTTGTTAC CAAAATGGAG GAATGCATGG GAGCTTGTGA TTGCATCATC ACAAAGGCGG GTCCAGGGAC
GATTGCAGAA GCCCAGATCA GAGGCCTCCC TATTATTTTG AATGATTACA TTGCTGGACA GGAAGCTGGC AATGTCCCCT
ATGTAGTTGA AAATGGATGT GGAAAGTTCT CTAAATCTCC TAAACAGATA GCAAAAATTG TTGCCGATTG GTTTGGTCCT
AAGGCCTACG AGCTACAACA AATGTCACAA AATGCATTGA GGCTGGCAAG GCCAGACGCT GTGTTCAAGA TTGTTCATGA
CCTTCACGAG CTGGTTAGAC AAAGAAGCTA CCTAGCAGAA TATTCTTGTA CAGCTTAA

>Vigan.03G245100.01
MNNGVRQESS VLLDLASHVN RFAFDHFRTD TAVQSSFLRF NGGAGAKRGV SLRVGAAGVR VRNILSEFNR AVRFHCEKIP
IGFASLRVAE GDGGGGGGCD GDGDGDGSGV RVDECGGVEN EGLRGNGVGG ERPKKVLILM SDTGGGHRAS AEAIKAAFYE
EFGDDYQVFV TDLWADHTPW PFNQLPRSYS FLVKHGPLWK MTYYGTAPRV VHQSNFAATG TFIAREVAKG LMKYQPDIII
SVHPLMQHVP LRILRSKGLL DKIVFTTVIT DLSTCHPTWF HKLVTRCYCP TTDVAQRALK AGLQQSQIKI FGLPVRPSFV
KPVRPKDELR RDLGMDEDLP AVLLMGGGEG MGPIEATARA LGDSLYDENI GAPVGQILVI CGRNKKLLNK LTSINWKVPV
QVKGFVTKME ECMGACDCII TKAGPGTIAE AQIRGLPIIL NDYIAGQEAG NVPYVVENGC GKFSKSPKQI AKIVADWFGP
KAYELQQMSQ NALRLARPDA VFKIVHDLHE LVRQRSYLAE YSCTA*