GBrowse Details

Vigan.03G245400.01

Basic Information:
Name: Vigan.03G245400.01
Multiple alignment
Variant Information
Position: Chr03:38137251..38141756 (+ strand)
Length: 4506
Functional Information:
Description: Similar to ER membrane protein complex subunit 4-like. [XP_003550241.1, Glycine max]
InterPro: Protein of unknown function DUF1077, TMEM85 (IPR009445)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:164.70,96.86,46.50,40.84,42.46,107.08,78.23,32.16
Arabidopsis thaliana homolog: AT5G10780.2
Automatic updates:
Name: NM_001251315 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305631 (LOC100305631), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:38137251..38137570 (+ strand)
Length: 320
Type: five_prime_UTR
Position: Chr03:38137571..38137693 (+ strand)
Length: 123
Type: CDS
Position: Chr03:38137781..38137837 (+ strand)
Length: 57
Type: CDS
Position: Chr03:38137961..38138114 (+ strand)
Length: 154
Type: CDS
Position: Chr03:38139156..38139253 (+ strand)
Length: 98
Type: CDS
Position: Chr03:38139906..38139971 (+ strand)
Length: 66
Type: CDS
Position: Chr03:38141393..38141431 (+ strand)
Length: 39
Type: CDS
Position: Chr03:38141432..38141756 (+ strand)
Length: 325
Type: three_prime_UTR


>Vigan.03G245400.01
ATTTTTTTCA CCTTACTACT TTTTTTCACA TTACTACTCT ATCTTTAAAT TAAATTTTAA CGATTTAAAA AGTAACCACC
GTGAGTATTG AAAAAAAGTG CTACACTGCA GTTTTCAATT TTTTCTGTTT TCACCTGATG ACTACTACGC AAAACCACGT
CGTTTTGAGA AAAGCAAAAC GAGCGTAGAG AAACTTCTGA AACCTCACAC CAGCTTTGCC CTCACTCACC CGGCACTGAA
CGCGATCCAG AGAGAGACAC GCCGCTCCTT AACGACGCCG TTTCGTTCGG TGCTGCCGTA TTCGCAAGCA GAGAGAATCG
ATGGAGAAGG GAAAGGGAGT GATGGGATCG GGAGGAAGAA GGTGGGCCGT TGACCTCTCC GACAATTCCA CTTCTCGCGA
TATTCCCGAT CCTCCCGGTT TCTCTCGCGC TTCTCTCGAC CAGGACGACT CAACGCTTAG TCGCCAAAAG AAGGACGCTG
AATCCAATTG GAAAGCCCAG AAAGCTTGGG AGGTAGCGCA AGCCCCTTTG AAGAATTTAC TGATGATGGG GTTCATGATG
TGGATGGCTG GTAGTACAGT CCACTTGTTC AGCATTGGGA TTACTTTCTC TGCTCTTTGG CAACCCATTA GTGCCTTGCA
GAGTGTCGGA AAGATTTTTG AGCCCTACAA AGACAATAAG GTGGAGCTTC TTGGACCTAA GCTGTTATTT ATAGCCCTTA
ATTTGGGTGG CTTGGCACTA GGTGTTTGGA AGCTCAATGC ATTGGGGCTT CTTCCTACAC ACACATCAGA CTGGGTCTCA
TCCTTGCCAC CTGCTCAGGA GGTGGAGTTT TCAGGTGGTG GTGTAAATTT GGGTTGATGT CCGATTTCTT TTCATGCCCA
ACTTGTCTTG GAGGCACTTT GAGTAAACAT TGATACGGAT TCAGGCTTAA CAGCAAATTC TAATGGTTAG ATGGACCACG
TGAGGCATGA CTTGTTTCCA ATTTTAAAAT TTGTTAGATA GCAATGCATT AAAGTTGGAA AGAGTTTGTA GTAGTAGACC
GGGGGTGCTC CAAATAATCA AGAACCGTTA TATTTTTATT TAGGATTCTA ATATTTGCGC ATTATAATTT TCTACATCTC
TTTCATCAGG TTGGATATAA AGAAAAGTGA TGTATAAAAA TCTCCCTTAT ATTTAAGAAG CA

>Vigan.03G245400.01
ATGGAGAAGG GAAAGGGAGT GATGGGATCG GGAGGAAGAA GGTGGGCCGT TGACCTCTCC GACAATTCCA CTTCTCGCGA
TATTCCCGAT CCTCCCGGTT TCTCTCGCGC TTCTCTCGAC CAGGACGACT CAACGCTTAG TCGCCAAAAG AAGGACGCTG
AATCCAATTG GAAAGCCCAG AAAGCTTGGG AGGTAGCGCA AGCCCCTTTG AAGAATTTAC TGATGATGGG GTTCATGATG
TGGATGGCTG GTAGTACAGT CCACTTGTTC AGCATTGGGA TTACTTTCTC TGCTCTTTGG CAACCCATTA GTGCCTTGCA
GAGTGTCGGA AAGATTTTTG AGCCCTACAA AGACAATAAG GTGGAGCTTC TTGGACCTAA GCTGTTATTT ATAGCCCTTA
ATTTGGGTGG CTTGGCACTA GGTGTTTGGA AGCTCAATGC ATTGGGGCTT CTTCCTACAC ACACATCAGA CTGGGTCTCA
TCCTTGCCAC CTGCTCAGGA GGTGGAGTTT TCAGGTGGTG GTGTAAATTT GGGTTGA

>Vigan.03G245400.01
MEKGKGVMGS GGRRWAVDLS DNSTSRDIPD PPGFSRASLD QDDSTLSRQK KDAESNWKAQ KAWEVAQAPL KNLLMMGFMM
WMAGSTVHLF SIGITFSALW QPISALQSVG KIFEPYKDNK VELLGPKLLF IALNLGGLAL GVWKLNALGL LPTHTSDWVS
SLPPAQEVEF SGGGVNLG*