GBrowse Details

Vigan.03G247200.01

Basic Information:
Name: Vigan.03G247200.01
Multiple alignment
Variant Information
Position: Chr03:38431035..38435225 (+ strand)
Length: 4191
Functional Information:
Description: Similar to Glutathione peroxidase. [V7CUL5, Phaseolus vulgaris]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: glutathione peroxidase activity (GO:0004602)
InterPro: Glutathione peroxidase (IPR000889)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:158.71,35.38,50.76,201.54,20.66,38.22,17.65,33.06
Arabidopsis thaliana homolog: AT4G31870.1
Automatic updates:
Name: NM_001249575 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative glutathione peroxidase 7, chloroplastic (LOC100305775), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:38431035..38431185 (+ strand)
Length: 151
Type: five_prime_UTR
Position: Chr03:38431186..38431521 (+ strand)
Length: 336
Type: CDS
Position: Chr03:38431752..38431828 (+ strand)
Length: 77
Type: CDS
Position: Chr03:38432009..38432070 (+ strand)
Length: 62
Type: CDS
Position: Chr03:38433512..38433630 (+ strand)
Length: 119
Type: CDS
Position: Chr03:38433710..38433877 (+ strand)
Length: 168
Type: CDS
Position: Chr03:38434350..38434379 (+ strand)
Length: 30
Type: CDS
Position: Chr03:38434380..38435225 (+ strand)
Length: 846
Type: three_prime_UTR


>Vigan.03G247200.01
AAGAGTTCTA ATTTCTAAAA ATTTTTGTTC AAAATGAGTT TATTTTGATA AAAAGAAAAA AATCATTGTT AATTATCATG
TGTTTCAATT TTACAACATT CTAATATTTT TTCCCCCTGT GTAACTTTCC AACCTACAAT TTCCATTCTG TATGACACAC
AGATTATCTT CCATATTCCA AGTACAGAAA GGACCAAACT TGAGAAGTCT CTTGAGTTTG CAACCACCAA ATATGTCCTC
CATGGCTTTC TCCACCACCT TCTTCACTCC CCTCCATGAT TTCACCCGTG CCAGAACAAA CCCACCACCT TCTCCCTCTT
TTCCTTTCAT CAAATCCTCC TTTGCTTCCT CCAACTCAAC CTTTTTTCAT CCTTCCCTTT CCCTACGAAC CTCATCAACT
TTTCCAAGGC TCTTCATAAA GCCTAGGTCT TTCTCAGTTC ATGCCAGAGC TGCCACAGAA AAGACCATCT ATGATTTTAC
TGTCAAGGAT ATTGAGAGAA AGGATGTCGC TCTTAGCAAA TTTAAGGGGA AGGTTCTATT GATTGTCAAT GTTGCTTCAC
GATGCGGTTT GACGTCATCG AATTACTCGG AGCTGTCTCG TTTGTACGAA AAGTATAAGG ATCAAGGTTT GGAGGTTCTA
GCTTTCCCCT GCAATCAATT TGGTATGCAG GAGCCTGGAT CGAATGAAGA AATTAAGCAG TTTGCTTGCA CTCGATATAA
AGCAGAATTT CCAATTTTTG ACAAGGTGGA TGTCAATGGA CCATTTACGG CTCCAGTGTA CAGTTTTCTG AAATCTAGTG
CTGGAGGCTT TCTGGGTGAT CTTATAAAGT GGAATTTTGA GAAATTCTTG GTTGATAAAA GTGGTAAAGT TATTGAAAGA
TACCCACCAA CAACGTCGCC TTTCCAAATT GAGAAGGATA TTCAGAGGTT ACTTGCTGCA TGAGGTTTGC ATTTCAGAAC
ACAAACAAGA ACTGTATGTA GGAGCATAAA GGGAGCGATC TTGCATAAGG AGTTAATACT TAAAACAGAT GATGAGCTAT
AAATATAGCC ATGTTAATTA CTTTGGTGTC TATACTAAAG AAATTACCAG TTTAGTGAAG AGAAGTTATA CTTCGTTTGC
CCAAAATGGT TCATATTAGT ATTTGTTCGT TCTGTTTTTG TGGGAAAATT CTATGGCCAT TTGTATTATC CTAATAATAT
GCTGTCATTA TAAAAGCTTG TAACTTGTGT AACATGGTAG ATGCAGCAGT ATACTGTTTC TTATTACCGC TATGTTCTTG
AAGTTAGGTT ATGTGAGATC ATTTTTTCAC CTTAAAAGAA GGTTAAATAT AAATTATTTG TCAACTTTAT TTCTTTTTGT
TAAAAAAATT TATTAAAGAG AGACAGTGGT ATGCAGGTGA TACATGATCA TCTGGTGTCA TGGAAGAGAA AAATGCAAAT
TATTGTTCCC AGGTCAAGTT CAAAGTCAAT TACTAATTTG TTACATGGTT CACATCACAT GTGAGGTTTT TTGCGGTTGA
AACATTTGGC AGTAGCTTCA TGAGAGGACA AAACATTTAG AAGTTGATTG TGACTGCGTT AGATAAAAAT TCTCTTCATG
GCCAAAGAAA GCTTTCTCTA TTGCAAAATT CTATTATAAG TCTTCAAATA TCTTAAATAT GCAACGAGTT AGAGTTTTGT
AAAATTTGCA TGCTCCAAAT AGAATGAAAG TATTCAGGTA TTACAGATGC TGTATTATTT GCAATCAATT TTCCCAATTT
CCTATAATTC TGGCAGATTC TCTTCCCTG

>Vigan.03G247200.01
ATGACACACA GATTATCTTC CATATTCCAA GTACAGAAAG GACCAAACTT GAGAAGTCTC TTGAGTTTGC AACCACCAAA
TATGTCCTCC ATGGCTTTCT CCACCACCTT CTTCACTCCC CTCCATGATT TCACCCGTGC CAGAACAAAC CCACCACCTT
CTCCCTCTTT TCCTTTCATC AAATCCTCCT TTGCTTCCTC CAACTCAACC TTTTTTCATC CTTCCCTTTC CCTACGAACC
TCATCAACTT TTCCAAGGCT CTTCATAAAG CCTAGGTCTT TCTCAGTTCA TGCCAGAGCT GCCACAGAAA AGACCATCTA
TGATTTTACT GTCAAGGATA TTGAGAGAAA GGATGTCGCT CTTAGCAAAT TTAAGGGGAA GGTTCTATTG ATTGTCAATG
TTGCTTCACG ATGCGGTTTG ACGTCATCGA ATTACTCGGA GCTGTCTCGT TTGTACGAAA AGTATAAGGA TCAAGGTTTG
GAGGTTCTAG CTTTCCCCTG CAATCAATTT GGTATGCAGG AGCCTGGATC GAATGAAGAA ATTAAGCAGT TTGCTTGCAC
TCGATATAAA GCAGAATTTC CAATTTTTGA CAAGGTGGAT GTCAATGGAC CATTTACGGC TCCAGTGTAC AGTTTTCTGA
AATCTAGTGC TGGAGGCTTT CTGGGTGATC TTATAAAGTG GAATTTTGAG AAATTCTTGG TTGATAAAAG TGGTAAAGTT
ATTGAAAGAT ACCCACCAAC AACGTCGCCT TTCCAAATTG AGAAGGATAT TCAGAGGTTA CTTGCTGCAT GA

>Vigan.03G247200.01
MTHRLSSIFQ VQKGPNLRSL LSLQPPNMSS MAFSTTFFTP LHDFTRARTN PPPSPSFPFI KSSFASSNST FFHPSLSLRT
SSTFPRLFIK PRSFSVHARA ATEKTIYDFT VKDIERKDVA LSKFKGKVLL IVNVASRCGL TSSNYSELSR LYEKYKDQGL
EVLAFPCNQF GMQEPGSNEE IKQFACTRYK AEFPIFDKVD VNGPFTAPVY SFLKSSAGGF LGDLIKWNFE KFLVDKSGKV
IERYPPTTSP FQIEKDIQRL LAA*