VIGGS:GBrowse

Vigan.03G249600.01

Basic Information:

Name:	Vigan.03G249600.01 Multiple alignment Variant Information
Position:	Chr03:38631529..38635201 (- strand)
Length:	3673

Functional Information:

Description:	Similar to PHD4. [Q06A76, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Molecular Function: protein binding (GO:0005515)
	Molecular Function: zinc ion binding (GO:0008270)
	Molecular Function: histone binding (GO:0042393)
InterPro:	Zinc finger, PHD-type (IPR001965)
	Zinc finger, FYVE/PHD-type (IPR011011)
	Zinc finger, RING/FYVE/PHD-type (IPR013083)
	Zinc finger, PHD-type, conserved site (IPR019786)
	Zinc finger, PHD-finger (IPR019787)
	Alfin (IPR021998)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:34.16,32.35,12.71,16.75,22.22,30.37,24.23,11.67
Arabidopsis thaliana homolog:	AT5G20510.1

Automatic updates:

Name:	NM_001250905 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max PHD2 (LOC100170695), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250938 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max PHD4 (LOC100170697), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:38631529..38631832 (- strand)
Length:	304
Type:	three_prime_UTR

Position:	Chr03:38631833..38632102 (- strand)
Length:	270
Type:	CDS

Position:	Chr03:38632415..38632547 (- strand)
Length:	133
Type:	CDS

Position:	Chr03:38633194..38633422 (- strand)
Length:	229
Type:	CDS

Position:	Chr03:38634810..38634842 (- strand)
Length:	33
Type:	CDS

Position:	Chr03:38634978..38635068 (- strand)
Length:	91
Type:	CDS

Position:	Chr03:38635069..38635201 (- strand)
Length:	133
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G249600.01
CCTATTTTCA TGTGTGTTGT GTTTTGTTGT ACACACTACA CACAGATACA TAAACATAGA GAGTGAGAAA AGGGTCAAAT
AGTTTACTTG TTTTTCTTTC CCTCCATTCT TTTCAACTCT GCAACCTTCG GACATGGACG CAGGATACAA TCCTCGTACG
GTCGAAGAGG TCTTTAGGGA TTTCAAAGGT CGCAGAGCTG CTCTGATTAA AGCTCTCACC ACTGATGTTG AAGAGTTCTA
CCAGCAGTGT GATCCCGAGA AGGAAAATCT TTGCCTTTAT GGATTTCCAA GTGAGCAGTG GGAAGTCAAT CTGCCAGCTG
AGGAGGTGCC TCCAGAGCTT CCAGAGCCAG CATTAGGTAT TAACTTTGCC AGAGATGGGA TGCAGGATAA GGACTGGCTG
TCTTTGGTTG CTGTACACAG TGATGCTTGG TTACTTGCTG TGGCTTTTTA TTTTGGTGCT AGGTTTGGGT TTGACAAGGC
TGATAGGAAG CGACTATTTA ACATGATTAA TGATCTTCCA ACTATATTTG AGGTTGTTAC TGGGATGGCC AAGAAACAAG
GAAAGGAAAA GTCATCAGTT TCAAATCATA GCAGTAACAA GTCAAAATCA AACTCTAAGC GAGGTTCTGA ATCAAAGAAC
ACAAAAGCAA TGCAATCAAA GGACGAGGAT GATGAGGGTG TGGCTTTGGA AGCTGATGAT GAAGAGGAGC ATGAAGAGAC
TTTCTGTGGG GCATGTGGAG AGAGCTACAC TTCTGATGAG TTCTGGATTT GCTGTGACAT CTGTGAGAAA TGGTTCCATG
GCAAGTGCGT GAAGATTACA CCTGCAAGAG CTGAGCACAT CAAGCAGTAC AAATGTCCAT CCTGCAGCAA CAAGAGAGCT
AGACCTTGAC CATGTGGCTA GGATGGTTGT GACTATAATC TTGGCAATTT TATAACTACT AATTTGTTTA GTAGGTCAAG
TTTATTAGTC TTGCTGTGAA TTTCAGGTAT ATTATTCCAG ATAAAACATT AGGTTTATGA GCTGCTGTTG ATTTACCTAC
CATTAGGATA GTTATTTCAT AAGCAGACTT TATGTTTTTG TTAAGTACTT TCTTAAATTT AATGTAGTTG TAACTGTGTT
GTGTCCATAG CTTGCTCAAG TTTATACTCA TATTCCATGT CATGGGAATC TCTTTTCATT TTTTTCACTG AAC

[show][hide][copy]CDS

>Vigan.03G249600.01
ATGGACGCAG GATACAATCC TCGTACGGTC GAAGAGGTCT TTAGGGATTT CAAAGGTCGC AGAGCTGCTC TGATTAAAGC
TCTCACCACT GATGTTGAAG AGTTCTACCA GCAGTGTGAT CCCGAGAAGG AAAATCTTTG CCTTTATGGA TTTCCAAGTG
AGCAGTGGGA AGTCAATCTG CCAGCTGAGG AGGTGCCTCC AGAGCTTCCA GAGCCAGCAT TAGGTATTAA CTTTGCCAGA
GATGGGATGC AGGATAAGGA CTGGCTGTCT TTGGTTGCTG TACACAGTGA TGCTTGGTTA CTTGCTGTGG CTTTTTATTT
TGGTGCTAGG TTTGGGTTTG ACAAGGCTGA TAGGAAGCGA CTATTTAACA TGATTAATGA TCTTCCAACT ATATTTGAGG
TTGTTACTGG GATGGCCAAG AAACAAGGAA AGGAAAAGTC ATCAGTTTCA AATCATAGCA GTAACAAGTC AAAATCAAAC
TCTAAGCGAG GTTCTGAATC AAAGAACACA AAAGCAATGC AATCAAAGGA CGAGGATGAT GAGGGTGTGG CTTTGGAAGC
TGATGATGAA GAGGAGCATG AAGAGACTTT CTGTGGGGCA TGTGGAGAGA GCTACACTTC TGATGAGTTC TGGATTTGCT
GTGACATCTG TGAGAAATGG TTCCATGGCA AGTGCGTGAA GATTACACCT GCAAGAGCTG AGCACATCAA GCAGTACAAA
TGTCCATCCT GCAGCAACAA GAGAGCTAGA CCTTGA

[show][hide][copy]PROTEIN

>Vigan.03G249600.01
MDAGYNPRTV EEVFRDFKGR RAALIKALTT DVEEFYQQCD PEKENLCLYG FPSEQWEVNL PAEEVPPELP EPALGINFAR
DGMQDKDWLS LVAVHSDAWL LAVAFYFGAR FGFDKADRKR LFNMINDLPT IFEVVTGMAK KQGKEKSSVS NHSSNKSKSN
SKRGSESKNT KAMQSKDEDD EGVALEADDE EEHEETFCGA CGESYTSDEF WICCDICEKW FHGKCVKITP ARAEHIKQYK
CPSCSNKRAR P*