GBrowse Details

Vigan.03G253900.01

Basic Information:
Name: Vigan.03G253900.01
Multiple alignment
Variant Information
Position: Chr03:39294336..39297919 (+ strand)
Length: 3584
Functional Information:
Description: Similar to Uncharacterized protein. [C6SWT2, Glycine max]
InterPro: Ribonucleoprotein LSM domain (IPR001163)
Ribonucleoprotein LSM domain, eukaryotic/archaea-type (IPR006649)
Like-Sm (LSM) domain (IPR010920)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:92.83,57.43,9.03,10.12,21.49,23.09,16.63,14.71
Arabidopsis thaliana homolog: AT1G65700.3
Automatic updates:
Name: NM_001250365 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305829 (LOC100305829), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:39294336..39294649 (+ strand)
Length: 314
Type: five_prime_UTR
Position: Chr03:39294650..39294686 (+ strand)
Length: 37
Type: CDS
Position: Chr03:39294870..39294910 (+ strand)
Length: 41
Type: CDS
Position: Chr03:39295005..39295079 (+ strand)
Length: 75
Type: CDS
Position: Chr03:39297059..39297111 (+ strand)
Length: 53
Type: CDS
Position: Chr03:39297220..39297310 (+ strand)
Length: 91
Type: CDS
Position: Chr03:39297311..39297919 (+ strand)
Length: 609
Type: three_prime_UTR


>Vigan.03G253900.01
ATCTTGCATA ATATATAATG TATGATTAAT TTTTTTTTCC ATAATTATGC ATAGTAAAAT TGTTAGTAAT CTTTCATGAA
CTATTTATAA TTGTTCTTAT TTTTGTATGC AACCTGGATG TCATAACCGC TAGTAGTTTG GTGTTAACAT GTAAATCCTG
CTGTTGAAGT TAAGACTTTT GATTTGGAGG TGTGGCATCA TATTTCTGCT CTACCCTGAT TGTAGCTGGT TCTGAATGTA
CATTTGCATT GCTTTAATTG ATGTTTTGAC GTTGAAACTT GTACAGGGGT GAGAGTGTTA CCTAGCTAAA AAGCATGTCA
GCTGGGCCTG GACTTGAGTC CCTTGTAGAT CAGACAATTT CAGTCATTAC AAATGATGGA CGGAATATAG TGGGAGTCCT
GAAGGGCTTT GACCAGGCCA CAAACATAAT TCTTGATGAG TCCCATGAGC GAGTTTATTC TACAAAGGAA GGTGTACAAC
AACTTGTTCT TGGTTTATAC ATCATCAGGG GTGACAACAT AAGTGTTGTT GGTGAACTGG ACGAAGATCT GGATTCTAAT
CTGGATTTAT CAAAACTTAG AGCTCATCCC TTGAAACCTG TCATCCATTG AGTGGAAATA CTTTCCATGG ATCTGCTGGG
TGAAAAGAGT GAGTTTTGCG GCACTTTATA CCAATTACGC TGTGAAACTC TCTAAGAATA TGATGCCAGA TAGCAGAACT
TTTCCAATAT TCTGATTCTA TTAAGCATGT AAGTTTTGTC AAACAAATGA ATGCAACAAA CTTGTGACTA TCTGTCGTGA
AGAAACTGTC CTCTATTTGG TTAAAATTGA TACGGAAGTT ATTTACAAGT GAAAAATGTG TATGATTATA GTTATTTTAA
AAAACTTACA TTTTACAAAA AAGTAAAACT CTTTCTTTTT TCTTTTTCTG TGTGTATTGA ATTGAATGCA GCATGAACAA
GGCATGTGAA ATTGATTTTT GAGGGGGAAG AAGATTCGAA TGTCAACAAA CACGTGTTGG TGGCATAGGA ACATTATCTT
AATTGTAGAG GTGAATGTCA TTTTAATCAT AAATTGATTG AATAAATAAT TTAAAAAATA TACAATTATA TATTAAATAA
TTAAATTATA ATAATAATAT AAGAAGAAAC TAATGGCTGG ATATTTTATC TTTTATCTTT TGTTTATATG TTATTACCAT
AAATAATGTA ATCAATAGGG 

>Vigan.03G253900.01
ATGTCAGCTG GGCCTGGACT TGAGTCCCTT GTAGATCAGA CAATTTCAGT CATTACAAAT GATGGACGGA ATATAGTGGG
AGTCCTGAAG GGCTTTGACC AGGCCACAAA CATAATTCTT GATGAGTCCC ATGAGCGAGT TTATTCTACA AAGGAAGGTG
TACAACAACT TGTTCTTGGT TTATACATCA TCAGGGGTGA CAACATAAGT GTTGTTGGTG AACTGGACGA AGATCTGGAT
TCTAATCTGG ATTTATCAAA ACTTAGAGCT CATCCCTTGA AACCTGTCAT CCATTGA

>Vigan.03G253900.01
MSAGPGLESL VDQTISVITN DGRNIVGVLK GFDQATNIIL DESHERVYST KEGVQQLVLG LYIIRGDNIS VVGELDEDLD
SNLDLSKLRA HPLKPVIH*