GBrowse Details

Vigan.03G256300.01

Basic Information:
Name: Vigan.03G256300.01
Multiple alignment
Variant Information
Position: Chr03:39542761..39549309 (+ strand)
Length: 6549
Functional Information:
Description: Similar to Asparaginyl endopeptidase. [Q9AUD9, Vigna radiata var. radiata]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: cysteine-type endopeptidase activity (GO:0004197)
InterPro: Peptidase C13, legumain (IPR001096)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.76,3.79,213.13,611.99,50.34,156.58,163.14,142.52
Arabidopsis thaliana homolog: AT1G62710.1, AT2G25940.1, AT4G32940.1
Automatic updates:
Name: NM_001249635 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuolar processing enzyme 2 (VPE2), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001317315 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata vacuolar-processing enzyme (LOC106764744), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:39542761..39543098 (+ strand)
Length: 338
Type: five_prime_UTR
Position: Chr03:39543099..39543293 (+ strand)
Length: 195
Type: CDS
Position: Chr03:39545557..39545721 (+ strand)
Length: 165
Type: CDS
Position: Chr03:39545810..39545966 (+ strand)
Length: 157
Type: CDS
Position: Chr03:39546531..39546616 (+ strand)
Length: 86
Type: CDS
Position: Chr03:39546802..39547001 (+ strand)
Length: 200
Type: CDS
Position: Chr03:39547276..39547324 (+ strand)
Length: 49
Type: CDS
Position: Chr03:39547459..39547665 (+ strand)
Length: 207
Type: CDS
Position: Chr03:39548107..39548313 (+ strand)
Length: 207
Type: CDS
Position: Chr03:39548578..39548760 (+ strand)
Length: 183
Type: CDS
Position: Chr03:39548761..39549309 (+ strand)
Length: 549
Type: three_prime_UTR


>Vigan.03G256300.01
AGGCCCAAGA TCCTAAAAAA AGAATCTCGC AACATTTTTA TTTTTTAATT TTAAATTTTA TATATATTCA ATTTTCTTAA
CAACTTACGT TGATAATAGT GAGGAATAAG TGAAATGCCA TCGATGGCGT AAGGGAAAAA GGCAAGGTGG GTCCCACGGT
GAAGCTTCCC TTATGAATAT AACCAAAAAT AAGGAAGGTA TCCAATTCGT CACCCACACG CTACCCGTTA CCCAACCTTC
CCAATTCGCA ATTATTGTTT ATCTATATAA TCTCTTATTC TCTGTTCAAA TTTCCAAATT ACAGCTACTT ACCTCACTCT
TCTCTCTTTG CTCTTCCAAT GGCCACCGCC ACTTCTCTTT CCACGCTCTT CCTTCTCTTC CTCGCAACCG TCGCTCTTGT
TGCTGCTCGC CGTGACCTCG TCGGAGACTT CCTCCGACTG CCGTCCGATT CCGGTAACGA TGACAACGTC CAGGGGACGC
GCTGGGCCAT CCTCTTCGCC GGTTCGAACG GCTATTGGAA CTACAGACAT CAGGCCGATA TTTGTCATGC CTATCAAATA
CTGAGGAAAG GTGGCCTGAA AGAAGAAAAT ATCATTGTTT TTATGTATGA TGACATTGCA TTCAATTGGG ACAATCCAAG
GCCTGGAGTC ATCATTAACA AACCAGATGG GGGTGATGTT TATGAAGGAG TTCCAAAGGA TTACACTGGC GAAGATGCTA
CTGCTCATAA CTTTTATGCT GCTTTACTTG GAGATAAGTC GGCGCTTACC GGTGGCAGTG GGAAGGTTGT GAACAGTGGG
CCCGATGATC GCATATTTAT ATTCTACTCT GATCATGGTG GTCCAGGGGT TCTCGGGACG CCTGCTGGTC CTTACATATA
TGCATCTGAT TTGGTTGAAG TATTGAAGAA AAAGCATGCT TCTGGAACGT ATAAAAACCT AGTATTTTAT TTGGAGGCAT
GTGAAGCTGG AAGTATTTTT GAAGGTCTTC TTCCTGAAGA TATCAATATT TATGCAACAA CGGCTTCGAA TGCCGAAGAA
AGTAGTTGGG GAACATATTG TCCTGGGGAG TATCCTAGTC CTCCCCCAGA ATATTCAACC TGCTTGGGTG ACCTGTACAG
TGTTGCTTGG ATGGAAGACA GTGATAGACA CAATTTGCGA ACAGAATCTT TACACCAACA ATATAAAGTG GTTAAGGATA
GGACTCTAGC TGGAGGTTAC TATGGCTCTC ACGTGATGCA GTATGGTGAT GTAGGGTTTA ACAAGGATAA TCTCTTCCTG
TATTTGGGTA CAGATCCTGC AAATGATAAT TTGACTTTCG TGGATGAAAA CTCCTTATGG TCATCTTCAA CAGCAGTCAA
CCAAAGGGAT GCTGATCTCG TCCATTTTTG GCATAAGTTC CGCAAAGCTC CGGAAGGTTC TCCTAAAAAA AATGAAGCTC
GGAAACAAGT TCTGGAAGTA ATGTCTCACA GAATGCATAT AGACGACAGT GTGAAACTTG TTGGAAAGCT TTTATTTGGA
TTTGAAAAGG CTCCTGAAGT ACTGAATGCT GTTAGACCGG CTGGATCGGC ACTTGTTGAT GACTGGGCCT GCCTGAAAAC
CATGGTAAGG ACTTTTGAGA CACATTGTGG ATCCTTGTCT CAGTATGGGA TGAAACACAT GAGGTCCTTT GCAAACATCT
GCAATGTAGG AATAAAGAAG GAGCAAATGG CTGAAGCCTC AGCACAAGCT TGTGTCACTA TTCCTGCCAG TTCCTGGAGT
TCTCTGCAAA GGGGTTTCAG TGCATAATTC CTGTAATGTT CACCGGTAAA GATCAAAGCA TGATTATTGT TACATTATGT
TATGTGGTTG TACATACATA TCTTGTCCCG CCTCTGTAAA TGCAATTGGG ACACTACTAG GAGTCGGAAG AAGGATCCAT
AGTTCCATAT ATTTTAGTTT GGCATATATT GCTTGTGTTT GGAAACCTGT TGAGAATGGA TGAATCACGT TTGTAATGTG
AAAGTTACAA CTACACTAGT TTCTGAAAAT TACATCAGAA ACGTGACAAA TCACATTTGA AACGCTAATC CAAACACGTA
ATGCAACTGC ATTTGTATAA ACCCATCCAT TTATGGCATT AGGAGGATAA AGCGATAGTT GCTTTGTATG CAAACACAGG
TTTATGATGT GTTTTGATTC AATAGGCAAC TGGCAGATCG GGTTTTCCCT AGTCACTTTG CAACAGACTG TCCAACATTT
TGTATAATTA TTCTCTGGTA CAACATATGA TGTAAAAATT ACTGTTTAAT GTTAATGGGG ACATTATATT TATCCTTTAT
GATATTTGGA CTCAAC

>Vigan.03G256300.01
ATGGCCACCG CCACTTCTCT TTCCACGCTC TTCCTTCTCT TCCTCGCAAC CGTCGCTCTT GTTGCTGCTC GCCGTGACCT
CGTCGGAGAC TTCCTCCGAC TGCCGTCCGA TTCCGGTAAC GATGACAACG TCCAGGGGAC GCGCTGGGCC ATCCTCTTCG
CCGGTTCGAA CGGCTATTGG AACTACAGAC ATCAGGCCGA TATTTGTCAT GCCTATCAAA TACTGAGGAA AGGTGGCCTG
AAAGAAGAAA ATATCATTGT TTTTATGTAT GATGACATTG CATTCAATTG GGACAATCCA AGGCCTGGAG TCATCATTAA
CAAACCAGAT GGGGGTGATG TTTATGAAGG AGTTCCAAAG GATTACACTG GCGAAGATGC TACTGCTCAT AACTTTTATG
CTGCTTTACT TGGAGATAAG TCGGCGCTTA CCGGTGGCAG TGGGAAGGTT GTGAACAGTG GGCCCGATGA TCGCATATTT
ATATTCTACT CTGATCATGG TGGTCCAGGG GTTCTCGGGA CGCCTGCTGG TCCTTACATA TATGCATCTG ATTTGGTTGA
AGTATTGAAG AAAAAGCATG CTTCTGGAAC GTATAAAAAC CTAGTATTTT ATTTGGAGGC ATGTGAAGCT GGAAGTATTT
TTGAAGGTCT TCTTCCTGAA GATATCAATA TTTATGCAAC AACGGCTTCG AATGCCGAAG AAAGTAGTTG GGGAACATAT
TGTCCTGGGG AGTATCCTAG TCCTCCCCCA GAATATTCAA CCTGCTTGGG TGACCTGTAC AGTGTTGCTT GGATGGAAGA
CAGTGATAGA CACAATTTGC GAACAGAATC TTTACACCAA CAATATAAAG TGGTTAAGGA TAGGACTCTA GCTGGAGGTT
ACTATGGCTC TCACGTGATG CAGTATGGTG ATGTAGGGTT TAACAAGGAT AATCTCTTCC TGTATTTGGG TACAGATCCT
GCAAATGATA ATTTGACTTT CGTGGATGAA AACTCCTTAT GGTCATCTTC AACAGCAGTC AACCAAAGGG ATGCTGATCT
CGTCCATTTT TGGCATAAGT TCCGCAAAGC TCCGGAAGGT TCTCCTAAAA AAAATGAAGC TCGGAAACAA GTTCTGGAAG
TAATGTCTCA CAGAATGCAT ATAGACGACA GTGTGAAACT TGTTGGAAAG CTTTTATTTG GATTTGAAAA GGCTCCTGAA
GTACTGAATG CTGTTAGACC GGCTGGATCG GCACTTGTTG ATGACTGGGC CTGCCTGAAA ACCATGGTAA GGACTTTTGA
GACACATTGT GGATCCTTGT CTCAGTATGG GATGAAACAC ATGAGGTCCT TTGCAAACAT CTGCAATGTA GGAATAAAGA
AGGAGCAAAT GGCTGAAGCC TCAGCACAAG CTTGTGTCAC TATTCCTGCC AGTTCCTGGA GTTCTCTGCA AAGGGGTTTC
AGTGCATAA

>Vigan.03G256300.01
MATATSLSTL FLLFLATVAL VAARRDLVGD FLRLPSDSGN DDNVQGTRWA ILFAGSNGYW NYRHQADICH AYQILRKGGL
KEENIIVFMY DDIAFNWDNP RPGVIINKPD GGDVYEGVPK DYTGEDATAH NFYAALLGDK SALTGGSGKV VNSGPDDRIF
IFYSDHGGPG VLGTPAGPYI YASDLVEVLK KKHASGTYKN LVFYLEACEA GSIFEGLLPE DINIYATTAS NAEESSWGTY
CPGEYPSPPP EYSTCLGDLY SVAWMEDSDR HNLRTESLHQ QYKVVKDRTL AGGYYGSHVM QYGDVGFNKD NLFLYLGTDP
ANDNLTFVDE NSLWSSSTAV NQRDADLVHF WHKFRKAPEG SPKKNEARKQ VLEVMSHRMH IDDSVKLVGK LLFGFEKAPE
VLNAVRPAGS ALVDDWACLK TMVRTFETHC GSLSQYGMKH MRSFANICNV GIKKEQMAEA SAQACVTIPA SSWSSLQRGF
SA*