GBrowse Details

Vigan.03G256900.01

Basic Information:
Name: Vigan.03G256900.01
Multiple alignment
Variant Information
Position: Chr03:39607445..39610251 (- strand)
Length: 2807
Functional Information:
Description: Similar to UPF0587 protein C1orf123 homolog. [XP_004498924.1, Cicer arietinum]
InterPro: Protein of unknown function DUF866, eukaryotic (IPR008584)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:58.12,61.35,42.99,29.58,66.68,96.31,28.15,40.55
Arabidopsis thaliana homolog: AT4G32930.2
Automatic updates:
Name: NM_001249713 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527737 (LOC100527737), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251329 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500192 (LOC100500192), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:39607445..39607712 (- strand)
Length: 268
Type: three_prime_UTR
Position: Chr03:39607713..39607835 (- strand)
Length: 123
Type: CDS
Position: Chr03:39608528..39608695 (- strand)
Length: 168
Type: CDS
Position: Chr03:39609869..39609976 (- strand)
Length: 108
Type: CDS
Position: Chr03:39610093..39610194 (- strand)
Length: 102
Type: CDS
Position: Chr03:39610195..39610251 (- strand)
Length: 57
Type: five_prime_UTR


>Vigan.03G256900.01
CCAAAACATC AAAATACCGG AAGCAGAAGT GTTATTGTGT ATCAGAGAGA GAGAGAAATG GTGAACTTCA CGTTGATGAT
CACTGCGGAG CTTGAGAATC TCACCAATCT TCAACCCCAA GGTGGCTGCG ACGATCCCGA TTTCTCTTAC CTTTTCAAGT
TGAAATGTGG GAGATGCGGT GAAATCAGCC AGAAAGAAAC ATGCGTCCTC TTAAACGACA CTGTTCCTCT TCCGGTTGGA
AAGGGCACCA CTCATCTCAT TCAAAAATGC AAATTTTGTG GCAGGGATGG CACTGTAACC ATGATCGAAG GCAAAGGTAA
ACCACTCACC CAGGAAATCA GTGAATCAGG GAAGTACGCC CCATTGATGT TATTTGACTG CAGGGGCTAT GAACCAGTAG
ATTTTGTATT CGGTGATGGA TGGAAAGTTG AATCGCTTGA GGGAACCAAA TTTGAGAATG TTGACTTGTC AAGTGGAGAA
TATGCTGACT ATGACGAGAA GGGAGAATGC CCAGTCATGA TATCTGCTCT TCGAGCTACT TTTGAAGTGA CAAAGTAGAA
AACTGGTTTG CTGTGTAAAC ACTTTCTTGA TGTATAAATT GACTGTTCTC TTCTAGATGA GCTTTTGAGC TCTGGGTTGC
ATCTTAATCA GGCAAGAAAT TGTGGAATCT TCTAACATTA CATGTTAACC TTGTATTTCT TCAAGAGAAA AAAAAAAACA
GCTTCAAGTT CCGTGTGATT GATGAAGTTT ACTTTTTCAT TGGTATCACT GGACATGACA CCACGACACC ACGCTAAATA
TTAAATTTTA AATTTGATTA TTAATA

>Vigan.03G256900.01
ATGGTGAACT TCACGTTGAT GATCACTGCG GAGCTTGAGA ATCTCACCAA TCTTCAACCC CAAGGTGGCT GCGACGATCC
CGATTTCTCT TACCTTTTCA AGTTGAAATG TGGGAGATGC GGTGAAATCA GCCAGAAAGA AACATGCGTC CTCTTAAACG
ACACTGTTCC TCTTCCGGTT GGAAAGGGCA CCACTCATCT CATTCAAAAA TGCAAATTTT GTGGCAGGGA TGGCACTGTA
ACCATGATCG AAGGCAAAGG TAAACCACTC ACCCAGGAAA TCAGTGAATC AGGGAAGTAC GCCCCATTGA TGTTATTTGA
CTGCAGGGGC TATGAACCAG TAGATTTTGT ATTCGGTGAT GGATGGAAAG TTGAATCGCT TGAGGGAACC AAATTTGAGA
ATGTTGACTT GTCAAGTGGA GAATATGCTG ACTATGACGA GAAGGGAGAA TGCCCAGTCA TGATATCTGC TCTTCGAGCT
ACTTTTGAAG TGACAAAGTA G

>Vigan.03G256900.01
MVNFTLMITA ELENLTNLQP QGGCDDPDFS YLFKLKCGRC GEISQKETCV LLNDTVPLPV GKGTTHLIQK CKFCGRDGTV
TMIEGKGKPL TQEISESGKY APLMLFDCRG YEPVDFVFGD GWKVESLEGT KFENVDLSSG EYADYDEKGE CPVMISALRA
TFEVTK*