GBrowse Details

Vigan.03G267100.01

Basic Information:
Name: Vigan.03G267100.01
Multiple alignment
Variant Information
Position: Chr03:40707589..40719254 (- strand)
Length: 11666
Functional Information:
Description: Similar to mannose-P-dolichol utilization defect 1 protein homolog 2-like. [XP_004499021.1, Cicer arietinum]
InterPro: Cystinosin/ERS1p repeat (IPR006603)
Mannose-P-dolichol utilization defect 1 protein (IPR016817)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.23,26.33,32.69,24.97,27.33,22.22,30.59,23.39
Arabidopsis thaliana homolog: AT4G07390.1
Automatic updates:
Name: NM_001255382 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mannose-P-dolichol utilization defect 1 protein homolog (LOC100806764), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255665 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mannose-P-dolichol utilization defect 1 protein homolog (LOC100787632), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:40707589..40707865 (- strand)
Length: 277
Type: three_prime_UTR
Position: Chr03:40707866..40707969 (- strand)
Length: 104
Type: CDS
Position: Chr03:40709596..40709637 (- strand)
Length: 42
Type: CDS
Position: Chr03:40709720..40709780 (- strand)
Length: 61
Type: CDS
Position: Chr03:40710224..40710283 (- strand)
Length: 60
Type: CDS
Position: Chr03:40717515..40717581 (- strand)
Length: 67
Type: CDS
Position: Chr03:40717679..40717751 (- strand)
Length: 73
Type: CDS
Position: Chr03:40718564..40718717 (- strand)
Length: 154
Type: CDS
Position: Chr03:40718933..40719079 (- strand)
Length: 147
Type: CDS
Position: Chr03:40719080..40719254 (- strand)
Length: 175
Type: five_prime_UTR


>Vigan.03G267100.01
AAAAATGGTA AAAGAATAAC ACTGAGCAAC AAAAAGAAGA AATACATTTC TTCTTTGTTG ACACTTGATC GAACCTGAAA
ATTCAGAAAG TGTAGTTTGA GTTTACAATC GATTCAGTCA AAGAGAATTG TTTGGTGAAA GAAGCGTTTT CTTCAGATCT
CACAGGTGGA GAGCGATGGA ATATCTAGGG ATTGATCTTA GCTGCGCCGT GGGATCGCTC CGCCACGGCC ACTTTCCGGA
GAAGGATTGC TTGCTCCCTC TCATTTCCAA ACTCCTCGGT TACGCCATCG TCGCCGCCTC CACAACCGTC AAACTCCCTC
AGATTATGAA AATTCTGAAG CATAAGAGTG TGAGGGGCCT TAGCATGATC TCCTTTGAGC TCGAAGTTAT CGGATACACC
ATCGCGTTGG CTTACTGTCT CCACAAAGGT CTTTCATTCT CGGCTTACGG AGAGTTGCTG TTTCTTTTGA TCCAAGCTAT
AATATTGGTT GCTGTAATCT ACTATTACTC TCGACCTTTG AGTACAATAA CATGCATCCG GGCATTGCTA TATTCTGCTA
TAGCACCCAC TATCTTTGCT GGTCAAATTG ATCCTTTCCT CTTTGAAGCT CTGTATGCAT CCCAGCATGC AATTTTTCTC
TTTGCCAGGA TCCCACAAAT ATGGCAAAAC TTTTCTAATA AAAGTACTGG GGAACTCAGC TTCTTAACAT CTTTTATGAA
TTTTGCTGGT TCAATGGTTA GAGTATTCAC AACTATCCAA GAAAATGCAC CAAACAGTGT TCTCTTGGGC TATGCAATTG
GTGTCGCAAC AAATTTTACC ATCCTGAGTC AGATAATATT ATACCAAAAA CCCCAGGTCG AAAAGGAGAA GAAAACCAAG
TAATAGAACC GTATCGAGTT GTGTATATCT TCAATCTACT CATCAAACGT CTTGTTTCAA GTTTATACTG CTGATATATT
AAGGTAACCA TTAATTCCAA AAGTAACAAC TGATTATTAT CTTTTACTTT GGATCCTGAG ACACTCTTGC TTAATTATTT
TATCGTTATT TATCAAAGCT AAAATTTAAA GGATACGTCC AGGTTCTTTG TAAGAAAATT TTATCATGAT TTGTTTGCCT
TAGTTCTACT CTTCTATAAT CATAAAATCT TAAGAATCTC 

>Vigan.03G267100.01
ATGGAATATC TAGGGATTGA TCTTAGCTGC GCCGTGGGAT CGCTCCGCCA CGGCCACTTT CCGGAGAAGG ATTGCTTGCT
CCCTCTCATT TCCAAACTCC TCGGTTACGC CATCGTCGCC GCCTCCACAA CCGTCAAACT CCCTCAGATT ATGAAAATTC
TGAAGCATAA GAGTGTGAGG GGCCTTAGCA TGATCTCCTT TGAGCTCGAA GTTATCGGAT ACACCATCGC GTTGGCTTAC
TGTCTCCACA AAGGTCTTTC ATTCTCGGCT TACGGAGAGT TGCTGTTTCT TTTGATCCAA GCTATAATAT TGGTTGCTGT
AATCTACTAT TACTCTCGAC CTTTGAGTAC AATAACATGC ATCCGGGCAT TGCTATATTC TGCTATAGCA CCCACTATCT
TTGCTGGTCA AATTGATCCT TTCCTCTTTG AAGCTCTGTA TGCATCCCAG CATGCAATTT TTCTCTTTGC CAGGATCCCA
CAAATATGGC AAAACTTTTC TAATAAAAGT ACTGGGGAAC TCAGCTTCTT AACATCTTTT ATGAATTTTG CTGGTTCAAT
GGTTAGAGTA TTCACAACTA TCCAAGAAAA TGCACCAAAC AGTGTTCTCT TGGGCTATGC AATTGGTGTC GCAACAAATT
TTACCATCCT GAGTCAGATA ATATTATACC AAAAACCCCA GGTCGAAAAG GAGAAGAAAA CCAAGTAA

>Vigan.03G267100.01
MEYLGIDLSC AVGSLRHGHF PEKDCLLPLI SKLLGYAIVA ASTTVKLPQI MKILKHKSVR GLSMISFELE VIGYTIALAY
CLHKGLSFSA YGELLFLLIQ AIILVAVIYY YSRPLSTITC IRALLYSAIA PTIFAGQIDP FLFEALYASQ HAIFLFARIP
QIWQNFSNKS TGELSFLTSF MNFAGSMVRV FTTIQENAPN SVLLGYAIGV ATNFTILSQI ILYQKPQVEK EKKTK*