GBrowse Details

Vigan.03G268800.01

Basic Information:
Name: Vigan.03G268800.01
Multiple alignment
Variant Information
Position: Chr03:40874061..40876128 (+ strand)
Length: 2068
Functional Information:
Description: Similar to 60S ribosomal protein L13. [V7CG35, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L13e (IPR001380)
Ribosomal protein L13e, conserved site (IPR018256)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.05,46.94,32.84,20.35,56.76,124.51,48.79,30.21
Structure :
Position: Chr03:40874061..40874510 (+ strand)
Length: 450
Type: five_prime_UTR
Position: Chr03:40874511..40874619 (+ strand)
Length: 109
Type: CDS
Position: Chr03:40874783..40874916 (+ strand)
Length: 134
Type: CDS
Position: Chr03:40875346..40875504 (+ strand)
Length: 159
Type: CDS
Position: Chr03:40875633..40875854 (+ strand)
Length: 222
Type: CDS
Position: Chr03:40875855..40876128 (+ strand)
Length: 274
Type: three_prime_UTR


>Vigan.03G268800.01
CTCAGAAGCT GCAGCCACAG CTACATACAG CAATCTCCTT CGGCGTCTCA ACGGAAGACC AGGTTTTTAC ATTTTCATAT
CTGGGTTCCA CTCTCTCTTT TCAATTTCTT TTGGTTTTAT ACCTACACGA GTTTGACAGA TTACTAAAAC CCTACTGAAA
AATGAAAAAT TCTATGTGCG ACTTGTCTAG CTTCGAGGAT CTGAAGATTT CTCTGTGGAA AAAATGATAA TTGTTCATGG
TTTATAGAAT CCTATAGCTT TAGACAACCA ATGGAGAATT GGGTATTTTC TTGTGGTATC ATTATATCAT GGTTTGCATA
TGAACAATAT CAAATGTGAA TTATTTTGGT TATAATGTCA TAGTATGTTG ATTGCAGTTT GGAGCTGATT TGTCTATTTT
ATTTGATCTT TTGTTGACTC TGTTGTTTTT GTTGTTCTTT TAAGTAAGCA ATGGTTAAGC ATAACAACGT CATCCCCAGT
GGACATTTCC GGAAACATTG GCAAAACTAT GTGAAGACTT GGTTTAATCA ACCAGCGAGA AAGACCAGAA GACGATTAGC
TCGGCAGAAG AAGGCTGTCA AAATTTTCCC CAGGCCAACT GCTGGACCTC TCAGGCCTGT TGTTCATGGT CAGACGTTGA
AATACAACAT GAAAGTCAGA GCTGGAAGAG GATTTTCTCT TGAAGAATTG AAGAGTGCTG GAATTCCAAA AAAACTTGCT
CCAACTATTG GCATTGCTGT TGATCATCGG CGCAAGAACC GTTCTTTGGA GGGTCTGCAG GCTAATGTTC AGAGACTCAA
AACATACAAG GCCAAGTTGG TTGTTTTCCC AAGACGGGCA CGAAAGGTGA AGACCGGTGA TTCTAGTGCT GAGGAACTAG
CAAATGCTAC CCAGGTTCAG GGTCCATTCT TGCCCATTGC GAGGGAGAAG CCTACTGTTG ACCTTGTTAA GGTAACAGAT
GAAATGAAGG CGTTCAAAGC TTACTATAAG CTTCGTCTTG AACGCACCAA CCAACGTCAC TATGGTGCCC GTTTAAAGAA
AGCTGCTGAA GCAGAGAAGG AAGACAAGAA ATAGTGTCCT TGAGAAGCCA ATTTGTTATC CGTATTATTC GTTTTCAGAA
ATTTTTGTTT GAGATTCTGC ACGCTTGGCT TTGGAAGATC GTTAGTCTTA AGAACGTCAG TCAGGTTTTT TTGGTGAACT
CAAGTTTGTT AATCGAATTA ACTGGTTTGT TATGATTATT TATGTGATTT TGTCTTCAGC AAGTTGTCTT TCTTAATTAC
TGATATGCAT GTTTTCCAGG CTTTCAAATT GATCTTCTTT TAGTATGAGT TGAAGGAGAT TACAGAGG

>Vigan.03G268800.01
ATGGTTAAGC ATAACAACGT CATCCCCAGT GGACATTTCC GGAAACATTG GCAAAACTAT GTGAAGACTT GGTTTAATCA
ACCAGCGAGA AAGACCAGAA GACGATTAGC TCGGCAGAAG AAGGCTGTCA AAATTTTCCC CAGGCCAACT GCTGGACCTC
TCAGGCCTGT TGTTCATGGT CAGACGTTGA AATACAACAT GAAAGTCAGA GCTGGAAGAG GATTTTCTCT TGAAGAATTG
AAGAGTGCTG GAATTCCAAA AAAACTTGCT CCAACTATTG GCATTGCTGT TGATCATCGG CGCAAGAACC GTTCTTTGGA
GGGTCTGCAG GCTAATGTTC AGAGACTCAA AACATACAAG GCCAAGTTGG TTGTTTTCCC AAGACGGGCA CGAAAGGTGA
AGACCGGTGA TTCTAGTGCT GAGGAACTAG CAAATGCTAC CCAGGTTCAG GGTCCATTCT TGCCCATTGC GAGGGAGAAG
CCTACTGTTG ACCTTGTTAA GGTAACAGAT GAAATGAAGG CGTTCAAAGC TTACTATAAG CTTCGTCTTG AACGCACCAA
CCAACGTCAC TATGGTGCCC GTTTAAAGAA AGCTGCTGAA GCAGAGAAGG AAGACAAGAA ATAG

>Vigan.03G268800.01
MVKHNNVIPS GHFRKHWQNY VKTWFNQPAR KTRRRLARQK KAVKIFPRPT AGPLRPVVHG QTLKYNMKVR AGRGFSLEEL
KSAGIPKKLA PTIGIAVDHR RKNRSLEGLQ ANVQRLKTYK AKLVVFPRRA RKVKTGDSSA EELANATQVQ GPFLPIAREK
PTVDLVKVTD EMKAFKAYYK LRLERTNQRH YGARLKKAAE AEKEDKK*