GBrowse Details

Vigan.03G269300.01

Basic Information:
Name: Vigan.03G269300.01
Multiple alignment
Variant Information
Position: Chr03:40931738..40934602 (+ strand)
Length: 2865
Functional Information:
Description: Similar to Uncharacterized protein. [I1MXN1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
S-ribonuclease binding protein, SBP1, pollen (IPR017066)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:168.36,107.63,23.64,25.06,31.13,41.64,26.63,23.79
Arabidopsis thaliana homolog: AT1G45976.1
Automatic updates:
Name: NM_001252768 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100783373 (LOC100783373), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:40931738..40931824 (+ strand)
Length: 87
Type: five_prime_UTR
Position: Chr03:40931825..40931898 (+ strand)
Length: 74
Type: CDS
Position: Chr03:40932056..40932156 (+ strand)
Length: 101
Type: CDS
Position: Chr03:40932486..40932808 (+ strand)
Length: 323
Type: CDS
Position: Chr03:40933801..40934328 (+ strand)
Length: 528
Type: CDS
Position: Chr03:40934329..40934602 (+ strand)
Length: 274
Type: three_prime_UTR


>Vigan.03G269300.01
CAAGTGTGGA AATTAAAAGA AACTTCTGCA TCGACCACCT CGTCATTTCC ATTTCCTTTT CTCGGTGGTG TTCTTCAATT
TCCATCCATG GCTTTCCCTC AGCACCACTT CCAACGGCAC TACCAAACCC AACAACAACA GCCACAGGCC AAACCCTTCA
GAAATCTGCA AACAATAGAT GGTCAGATTC CACAGCAGGT GGCGTTTTAC AACCCTACTG ATTTGCAAGA TCAGTCCCAG
CATCCACCCT ACATACCTCC CTTTCATGTT GTTGGGTTTG CTCCGGGTCC TGTTCCTCCT GCTGATGGCA GTGATGGTGG
AGTTGATTTG CAATTGCAAT GGAATTATGG TTTGGAGCCA GAGAGGAAGA GACTTAAAGA ACAGGACTTT TTGGAGAACA
ATTCTCAGAT ATCTTCTGTT GATTTTCTCC AACCACGATC AGTTTCAACT GGGTTAGGCT TGTCACTCGA CAATACTCGC
CTGACATCCA CCGGAGACTC AGCTTTGTTG TCGCTCATTG GCGATGACAT TGAGCGTGAG TTGCAGCAGC AGGATGTAGA
GATAGATAGA TTTCTCAAAG TGCAGGGTGA AAGGCTGCGT CAATCAATCT TAGAAAAGGT TCAAGCAACA CAGCTTCAGA
GTGTCTCACT CATAGAAGAC AAAGTACTTC AGAAACTTCG CGAGAAAGAA GCTGAGGTTG AAAGCATCAA CAAGAGGAAC
ATGGAACTTG AAGACCGAAT GGAGCAGTTG ACTGTGGAAG CTGGTTCGTG GCAGCAGCGA GCAAGATACA ATGAAAACAT
GATTGCTGCT CTCAAGTTCA ACCTTCAGCA AGCATATGTC CAAAGTAGAG ATAGTAAAGA AGGATGTGGT GACAGTGAGG
TTGATGACAC AGCTTCTTGC TGCAATGGCC GTACCCTTGA TTTTCATCTG CTTTCTAAGG AGAACACTGA TATGAAAGAG
ATGATGACAT GCAAGGCTTG CAGAGTGAAT GAAGTGACCA TGGTTTTGTT ACCTTGTAAG CATCTTTGCC TCTGTAAAGA
TTGTGAAAGT AAGCTTAGTT TCTGTCCTCT ATGTCAATCC TCCAAATTTA TAAGCATGGA GGTCTACATG TAACTGCAAA
GTATACTTGT ACACGTGAAA TCTCTAATTT CATGTCATTA TTATGTGCGT CTGTTCTTGT AGCTTGTCTC TGAGGACCAT
GACACGTTGT AACTAGTTTC TAAGATGCAT TTGACCATAA TGTGTTCCAC ATGTTTGAGA ACAATGGTTA TTGAAAGCAT
CATGCACCGA TGCAGGTGAC ATTTGTACTG TGTATCACAA CTTTGTTTTC CAAAAGAAAA TTGTTAGAAG AGGTAATCTT
ACTATTGCTA TAAATGTTTT TCCACAT

>Vigan.03G269300.01
ATGGCTTTCC CTCAGCACCA CTTCCAACGG CACTACCAAA CCCAACAACA ACAGCCACAG GCCAAACCCT TCAGAAATCT
GCAAACAATA GATGGTCAGA TTCCACAGCA GGTGGCGTTT TACAACCCTA CTGATTTGCA AGATCAGTCC CAGCATCCAC
CCTACATACC TCCCTTTCAT GTTGTTGGGT TTGCTCCGGG TCCTGTTCCT CCTGCTGATG GCAGTGATGG TGGAGTTGAT
TTGCAATTGC AATGGAATTA TGGTTTGGAG CCAGAGAGGA AGAGACTTAA AGAACAGGAC TTTTTGGAGA ACAATTCTCA
GATATCTTCT GTTGATTTTC TCCAACCACG ATCAGTTTCA ACTGGGTTAG GCTTGTCACT CGACAATACT CGCCTGACAT
CCACCGGAGA CTCAGCTTTG TTGTCGCTCA TTGGCGATGA CATTGAGCGT GAGTTGCAGC AGCAGGATGT AGAGATAGAT
AGATTTCTCA AAGTGCAGGG TGAAAGGCTG CGTCAATCAA TCTTAGAAAA GGTTCAAGCA ACACAGCTTC AGAGTGTCTC
ACTCATAGAA GACAAAGTAC TTCAGAAACT TCGCGAGAAA GAAGCTGAGG TTGAAAGCAT CAACAAGAGG AACATGGAAC
TTGAAGACCG AATGGAGCAG TTGACTGTGG AAGCTGGTTC GTGGCAGCAG CGAGCAAGAT ACAATGAAAA CATGATTGCT
GCTCTCAAGT TCAACCTTCA GCAAGCATAT GTCCAAAGTA GAGATAGTAA AGAAGGATGT GGTGACAGTG AGGTTGATGA
CACAGCTTCT TGCTGCAATG GCCGTACCCT TGATTTTCAT CTGCTTTCTA AGGAGAACAC TGATATGAAA GAGATGATGA
CATGCAAGGC TTGCAGAGTG AATGAAGTGA CCATGGTTTT GTTACCTTGT AAGCATCTTT GCCTCTGTAA AGATTGTGAA
AGTAAGCTTA GTTTCTGTCC TCTATGTCAA TCCTCCAAAT TTATAAGCAT GGAGGTCTAC ATGTAA

>Vigan.03G269300.01
MAFPQHHFQR HYQTQQQQPQ AKPFRNLQTI DGQIPQQVAF YNPTDLQDQS QHPPYIPPFH VVGFAPGPVP PADGSDGGVD
LQLQWNYGLE PERKRLKEQD FLENNSQISS VDFLQPRSVS TGLGLSLDNT RLTSTGDSAL LSLIGDDIER ELQQQDVEID
RFLKVQGERL RQSILEKVQA TQLQSVSLIE DKVLQKLREK EAEVESINKR NMELEDRMEQ LTVEAGSWQQ RARYNENMIA
ALKFNLQQAY VQSRDSKEGC GDSEVDDTAS CCNGRTLDFH LLSKENTDMK EMMTCKACRV NEVTMVLLPC KHLCLCKDCE
SKLSFCPLCQ SSKFISMEVY M*