GBrowse Details

Vigan.03G270600.01

Basic Information:
Name: Vigan.03G270600.01
Multiple alignment
Variant Information
Position: Chr03:41055675..41058675 (+ strand)
Length: 3001
Functional Information:
Description: Similar to non-specific lipid-transfer protein-like. [XP_004499058.1, Cicer arietinum]
GO: Molecular Function: sterol binding (GO:0032934)
InterPro: SCP2 sterol-binding domain (IPR003033)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:192.53,55.23,31.85,18.33,23.07,45.49,15.22,18.43
Arabidopsis thaliana homolog: AT5G42890.1
Automatic updates:
Name: NM_001249144 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sterol carrier protein 2-like (LOC100500301), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250163 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500120 (LOC100500120), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:41055675..41055845 (+ strand)
Length: 171
Type: five_prime_UTR
Position: Chr03:41055846..41055974 (+ strand)
Length: 129
Type: CDS
Position: Chr03:41056065..41056125 (+ strand)
Length: 61
Type: CDS
Position: Chr03:41057236..41057338 (+ strand)
Length: 103
Type: CDS
Position: Chr03:41057441..41057522 (+ strand)
Length: 82
Type: CDS
Position: Chr03:41057523..41058675 (+ strand)
Length: 1153
Type: three_prime_UTR


>Vigan.03G270600.01
CATTTCAATA CGTAACACCG TAACGTAACG AAACAGGGAG AGGAGTATAA ATACAGAAGT TACGGGAAAG CTGAAATCAG
ATGGTGCTGG TCCCACTCCT CCAACCAACA CACCCGAACT TAAACCAAAC TCGAACTGGT AGGTTTCGTG TGATTGTTGC
GTCGCGAAGC CATGGCGGAT TCTTCGAACC TGAAATCCGA CGCGATTATG GAGCAGATGA AGCAGCACTT CGCCACTGAC
GCTGGCAAAA AGCTCACGGA AAAAATTGGA CTAGTTTATC AATTTCACAT TGCTCCGAAG AAACTTGGAT TTGATGAGGT
CGTCTACACC GTTGATCTCA AGAAAGGAGA GGTCACCAAA GGGCTATACG AAGGAGGAAA ACCCGATGCA TCCTTTTCAT
TTAAGGACGA GGACTTTGTT AAGATTGCCT TGGGAAAGAT GAATCCGCAG ATTGCTTTCA TGAGGGGTGC GATGAAGATT
AAGGGGAGTT TGAGTGCTGC TCAGAAATTT ACTCCGGATA TCTTCCCAAA GCCTTCCAAG CTGTGAGCTG AGATGCTTTC
AACTACTTAA GATTGCAAGA ATTATCGTTT GATGCACTCA ACCAAAATAG ATAGCATCAA CATTTCAGGA ATATAATTAT
ATATCTTTAG GTAATACATG ATTTTAATTT AGCGCTGTCC TGCAAATCTG TCATATCTTT ATTGCATTGT AATGGGATGT
TTTATGTATG AAAATAGTAT ATCATACATT GTTTACAACC ACTTTTCTAT TTTTTATTTA TAAATTCTCG GACCAATACA
TGGTTTTCTG ACTATTTGTT GGATTTTTCA GCATGTGTCT ACACCCTGCA TAAGCGATCA CTATCTTTGC TAATGCTATT
TTTATCAACC AAAATTGCTA ATGTTTTCTT TATCAATCTT TATATTATTT CAGTAGCATA TATCACTGTT AAGTTTTCTT
CAAATGACAT TCCAGTGTCA ACATCTACAC AGTTGTTATT GTAATCTATT GTGACCTAGG TTGTGCTGAA AAATACTAAC
TAGTATTATT CTCAGTCATT TTCCTGTTGG GAGTGAAACC ATTAGAACCT TTATAGAAAT ATGATTTTAT TGTTTAAGGA
GTGAGGGTTC ATATATTCAT GGTTCATTTT AATTCAGATA TATTATATCT CTTACGGTTT ATCTTTATAT ACTAAGAAAA
TCTCCATCTC CTTATGTCGC ACATCATACA CCCTATCGAT ATTAATAAGG GTGTCACTGC TTATCAGGCA ATAAGAGTTT
CAAATCTATT TTGTACACAT TTTTGGGGCT GAGGGGCTCG AAATTTGCTA TGTTGTCGTC ACAGCGAAAA GCTTTAACTG
GGTTGGGTGT TGTGAAACTT GTCCTTCTCA TCCTATAGTT AAATTGATTT TATTGTCAAT TTGATCATTA TCTTGTACTG
TTCCTTTCTT CATTACTCAC GCATTTGTTT CTTATTCAAA CTGCTATCTT CTACTCAATT TACATGCGTT GAACAGTAAA
GCTTACTTCT TGTTTTGAAC CCTTAGAGCC AATAAAGGCA AATATGATTA AGTTCAAATC GCAGTGAGAA TGATCACAAA
ACATTGATGT CGTGCATGCT AGAAAGGTAG GAAAGTTTGC ACCAAAATTA TTGAAATGGA CAAAATTTTA TAATTTTTTT
TCATATGAAT AAATCGCGT

>Vigan.03G270600.01
ATGGCGGATT CTTCGAACCT GAAATCCGAC GCGATTATGG AGCAGATGAA GCAGCACTTC GCCACTGACG CTGGCAAAAA
GCTCACGGAA AAAATTGGAC TAGTTTATCA ATTTCACATT GCTCCGAAGA AACTTGGATT TGATGAGGTC GTCTACACCG
TTGATCTCAA GAAAGGAGAG GTCACCAAAG GGCTATACGA AGGAGGAAAA CCCGATGCAT CCTTTTCATT TAAGGACGAG
GACTTTGTTA AGATTGCCTT GGGAAAGATG AATCCGCAGA TTGCTTTCAT GAGGGGTGCG ATGAAGATTA AGGGGAGTTT
GAGTGCTGCT CAGAAATTTA CTCCGGATAT CTTCCCAAAG CCTTCCAAGC TGTGA

>Vigan.03G270600.01
MADSSNLKSD AIMEQMKQHF ATDAGKKLTE KIGLVYQFHI APKKLGFDEV VYTVDLKKGE VTKGLYEGGK PDASFSFKDE
DFVKIALGKM NPQIAFMRGA MKIKGSLSAA QKFTPDIFPK PSKL*