VIGGS:GBrowse

Vigan.03G277500.01

Basic Information:

Name:	Vigan.03G277500.01 Multiple alignment Variant Information
Position:	Chr03:41685343..41688920 (- strand)
Length:	3578

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M8G8, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S9 (IPR000754)
	Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
	Ribosomal protein S5 domain 2-type fold (IPR020568)
	Ribosomal protein S9, conserved site (IPR020574)
	Ribosomal protein S9, bacterial/plastid (IPR023035)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:88.92,64.35,34.23,116.83,12.14,54.55,7.71,20.24
Arabidopsis thaliana homolog:	AT1G74970.1

Automatic updates:

Name:	NM_001248816 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305975 (LOC100305975), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001361131 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 30S ribosomal protein S9 (LOC100811697), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:41685343..41685979 (- strand)
Length:	637
Type:	three_prime_UTR

Position:	Chr03:41685980..41686267 (- strand)
Length:	288
Type:	CDS

Position:	Chr03:41688564..41688884 (- strand)
Length:	321
Type:	CDS

Position:	Chr03:41688885..41688920 (- strand)
Length:	36
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G277500.01
ATCCACTCAA GCTTGCATTT GCCAAGGCAG TGGAAAATGG CGGTTTCCCT TTCGGCACTC AGCACCTCCC TCTCTTCACT
TTCTTTCTCT TCCCACATTT CTCAGAGACC CAACACTCTC TCCTTCGCCA CAACGCTCTC CCTCTCGCGC TTCCCCAAAA
TCCCTTCCCT CGTCGTCTCC GCCACTGCGC TCGCCGAACC GGAAACCGAA GACCTCAAGA AGTTCGTCAA ATCGAGGCTT
CCTGGTGGCT TCGCCGCCCA GACCATCATA GGCACCGGTC GCCGTAAGAG CGCCATCGCT CGCGTCGTTC TCCAGGAAGG
AACCGGCAAA TTCATCATCA ATTACCGCGA CGCTAAGGAA TATCTTCAAG GAAACCCATT GTGGCTTCAA TACATTAAGG
TCCCTTTGAT AACTTTGGGA TATGAAAGTA GTTATGATGT TTTTGTCAAA GCTGAGGGTG GTGGCTTGTC TGGTCAGGCA
CAGGCAATTT CTCTTGGCAT TGCCCGTGCC TTGCTGAAGG TGAGCGAAGA TCATAGATCA CCATTGAGAC AGGAAGGACT
TCTTACCAGA GATTCCAGAG TGGTTGAGAG GAAGAAAGTT GGTTTGAAGA AAGCTCGTAA AGCCCCTCAA TATTCCAAAC
GTTGAGGTTG GGATTTTACA TGTATGGTTT GTATTTTTCT GTCCTCCTGG TGTCTCTGGA ATGGGATTAT ATTGGAAACA
ACTATTTGTT TTCATTTGTT GTTGTAGATT TTCGTTAGAG AAAGTAAAGA GAGATTGAGA AGTATCCCAA GGCGTGTAAT
GTATTCAGAA TCTTGCCATC CGTTTCCCCA TCCCTTGTTT CCTTGATCTG TATGGAATTG GAATTGTAGG TATGATGATA
TTTCTCTTTC ACCCCCAACC AAACTAGTGG TTTACTACCA TAGTGCAGGT TTCTTTTCCT GACCTAAATT GTGGTACTTA
TCCTTAATTT CTTATGCCTA TTTGTTCCTT CATTTGGCAT ATTGAGATAA ATAATGGCGT GTGAAATTTC TTAGTGTATC
AATTTTTCAT CGTTTGTCAG AGGTAGACAT AAACTTTGAT TGGTTGTGCC TCTAGACATC ATGCTGTCAC AAGAACAACT
CTTGTACAGA AATTCTTGAT AAAATAATAC CAAAGAAAAA ATGGATGTGC AACAATTTAG TTTCCATGCC AATCGCCTCC
AGTATTCTTG TTATCTATGC CAAGCCTATC ACTCTATTAT CTCTCTGTAG ATATAGTGAA GATGTTACAT TTGTTTCTAT
TG

[show][hide][copy]CDS

>Vigan.03G277500.01
ATGGCGGTTT CCCTTTCGGC ACTCAGCACC TCCCTCTCTT CACTTTCTTT CTCTTCCCAC ATTTCTCAGA GACCCAACAC
TCTCTCCTTC GCCACAACGC TCTCCCTCTC GCGCTTCCCC AAAATCCCTT CCCTCGTCGT CTCCGCCACT GCGCTCGCCG
AACCGGAAAC CGAAGACCTC AAGAAGTTCG TCAAATCGAG GCTTCCTGGT GGCTTCGCCG CCCAGACCAT CATAGGCACC
GGTCGCCGTA AGAGCGCCAT CGCTCGCGTC GTTCTCCAGG AAGGAACCGG CAAATTCATC ATCAATTACC GCGACGCTAA
GGAATATCTT CAAGGAAACC CATTGTGGCT TCAATACATT AAGGTCCCTT TGATAACTTT GGGATATGAA AGTAGTTATG
ATGTTTTTGT CAAAGCTGAG GGTGGTGGCT TGTCTGGTCA GGCACAGGCA ATTTCTCTTG GCATTGCCCG TGCCTTGCTG
AAGGTGAGCG AAGATCATAG ATCACCATTG AGACAGGAAG GACTTCTTAC CAGAGATTCC AGAGTGGTTG AGAGGAAGAA
AGTTGGTTTG AAGAAAGCTC GTAAAGCCCC TCAATATTCC AAACGTTGA

[show][hide][copy]PROTEIN

>Vigan.03G277500.01
MAVSLSALST SLSSLSFSSH ISQRPNTLSF ATTLSLSRFP KIPSLVVSAT ALAEPETEDL KKFVKSRLPG GFAAQTIIGT
GRRKSAIARV VLQEGTGKFI INYRDAKEYL QGNPLWLQYI KVPLITLGYE SSYDVFVKAE GGGLSGQAQA ISLGIARALL
KVSEDHRSPL RQEGLLTRDS RVVERKKVGL KKARKAPQYS KR*