GBrowse Details

Vigan.03G279500.01

Basic Information:
Name: Vigan.03G279500.01
Multiple alignment
Variant Information
Position: Chr03:41879523..41881741 (+ strand)
Length: 2219
Functional Information:
Description: Similar to deSI-like protein At4g17486-like. [XP_004499134.1, Cicer arietinum]
InterPro: PPPDE putative peptidase domain (IPR008580)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.56,2.17,18.60,14.61,13.57,9.92,4.00,10.06
Arabidopsis thaliana homolog: AT1G47740.1
Automatic updates:
Name: NM_001252981 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0326 protein At4g17486-like (LOC100804405), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255659 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PPPDE putative peptidase domain-containing protein (LOC100788399), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:41879523..41880434 (+ strand)
Length: 912
Type: five_prime_UTR
Position: Chr03:41880435..41880645 (+ strand)
Length: 211
Type: CDS
Position: Chr03:41880783..41881070 (+ strand)
Length: 288
Type: CDS
Position: Chr03:41881161..41881417 (+ strand)
Length: 257
Type: CDS
Position: Chr03:41881418..41881741 (+ strand)
Length: 324
Type: three_prime_UTR


>Vigan.03G279500.01
TTTTTTTTTT TTTTTTTATT CTCTCTCTCT CTGTAAACAC TGAAGAATTT GTAATGATAC TATTGGGCTC TTGTTTTTGA
GGCCACTGTT CTTGCTTCTG CTGCATTAGC AATCTGGGAC CGTTTTTTTT TCAGTACCCT CTCCAACCAA AGTTCAAAAA
CCTTTTTTTT TTTAAGGAAG CCATTGTTGT TTTATAGTCT TGCTTGTGGT AGATCTGAAG CTGTGAGGCC AAACTCTGTT
CTTTCATTTC CTTCTTGTGC TTAAATTGCA AGTCTGGAAT AGTTTATGCT CTGCTCGATT TGGTTGCTTT CGACAGTTTT
CAGGAATTGA AACACTTGCA AGCTTTATTT TTTTTTTCTT TCCAGTTTTC AATCTGTATT TGTTGTTGTG ATTTGGTGCT
CATTCTGCTA AGTTCCTAAT TTCTAATTCT TCTTCATCGT ATGTTCGTGC CCAAGAGGAT ATTTGCACTG AAAATTAAGA
ATTTTTTTTT GGCCTTTTCA ATCTGGGAAG TCTATGCAAG ATCTTCTAAA CCATTGAAGG GGCAAAACTG AAAGTGCCAT
TGTCGTTTCA AGTTATCATG TCTTGGATAA GTTTGTTGGA TTTTTCCTTT TGCTATAATT TGACGACATG GTTTGAATTT
TAGTTTACTA ACAAGAGAGA GGGGTTAGCT TGGTTGACTT GTAAGACTGA TAGGTGAAGT TAAATTATGA GGAAAGGGAG
AAGGAATGGT TAGACCTTAT TAACAGGGGA TTTAGTGTGA ATTTTCATGT TCAGATGGAA GCTAGTAGTT GAAACCTTAG
CATCTTTTTA TGTGTTTGAC GTTATTTGTT TCCTTCATAA TGCAATGTAT CCCCAAAGAC TGTAAATGTT TGGTGGATTC
AGGTACCATG CTGTTGTTCC CAATAGGGAA AGATGAAATT GAAGTCTAAG AAAGGATGGA AGTCCGTTGT GGCTGTTCAT
TTGAAAGGAA AATCATCAAC CCGTTTTTCT TTATTTCGCA AAGTGAATTC AGGTGGCCAT GGACCGGGGA AAACACCAGT
TTATCTGAAT GTTTATGACT TGACACCCGT GAATGGTTAT GTGTACTGGG CTGGTCTTGG TATATATCAC TCTGGTGTAG
AAGTTCATGG TGTAGAATAT GCATTTGGAG CTCATGACTA CCCAACAAGT GGTGTTTTTG AGGTTGAGCC TCGACAATGC
CCTGGCTTCA AATTCAGGAA GTCAATACTC ATAGGAACCA CAACTTTGGA TTCTACTCGG GTCAGGGAGT TCATGGAACG
CCAGTCAGCA AACTACAATG GTGACACATA TCACTTGATT GTTAAGAATT GCAACCACTT CTGCAAAGAC ATCTGTTACA
AGCTGACGGG GAAATCCATT CCAACATGGG TAAATCGATT GGCCAGGCTA GGTTCAATTT GCAATTGCAT ACTCCCTGAA
GCACTGAGGA TTTCTGGTGT GGGGCATGAT CCTAATTATG AGGCTGAAGA CAATGAAAAG AGAAGGCTTC GAAGTGGCTT
GAACTGCTTG TCCTCAATCT CCATGCGTCA GAAGCACCTC TCCACTTCTT CACTGTTTCT ACAGTCACCA TTAAGAGGCT
GCTTGTCATC GTCATGGCCC TCCTGGGAAT TGAGAAAATC CATTAACCGT TCCTTGAAGG AACGATAACT CAAACTTTGA
GAATTCTATC AATCTTGGTT ATGTTAGTCT TCTGTAAGTA GTATTTCTGT TTCGCCACTT GTAACTTCAT TTTCTTTTCC
TGTCTTTTCC CATAAACCTC TCCTACTTTT TTATTAATGG TGGTGCTACA TCTGCCATTC ATATGTTCAT TTTCTCAATT
TGAAACTAAG AACGATCCTT TCCAAGATGC CCCCGAAACT TGTACTCTTT TTTCTTTTTT AATTTATTTA TACATTATCA
TGTAATAATG TGCACCACAA GTTCATGATC ATTTGAAAAA CACGTGTGCA TAATTTGAGT TCAATAGTTT AA

>Vigan.03G279500.01
ATGAAATTGA AGTCTAAGAA AGGATGGAAG TCCGTTGTGG CTGTTCATTT GAAAGGAAAA TCATCAACCC GTTTTTCTTT
ATTTCGCAAA GTGAATTCAG GTGGCCATGG ACCGGGGAAA ACACCAGTTT ATCTGAATGT TTATGACTTG ACACCCGTGA
ATGGTTATGT GTACTGGGCT GGTCTTGGTA TATATCACTC TGGTGTAGAA GTTCATGGTG TAGAATATGC ATTTGGAGCT
CATGACTACC CAACAAGTGG TGTTTTTGAG GTTGAGCCTC GACAATGCCC TGGCTTCAAA TTCAGGAAGT CAATACTCAT
AGGAACCACA ACTTTGGATT CTACTCGGGT CAGGGAGTTC ATGGAACGCC AGTCAGCAAA CTACAATGGT GACACATATC
ACTTGATTGT TAAGAATTGC AACCACTTCT GCAAAGACAT CTGTTACAAG CTGACGGGGA AATCCATTCC AACATGGGTA
AATCGATTGG CCAGGCTAGG TTCAATTTGC AATTGCATAC TCCCTGAAGC ACTGAGGATT TCTGGTGTGG GGCATGATCC
TAATTATGAG GCTGAAGACA ATGAAAAGAG AAGGCTTCGA AGTGGCTTGA ACTGCTTGTC CTCAATCTCC ATGCGTCAGA
AGCACCTCTC CACTTCTTCA CTGTTTCTAC AGTCACCATT AAGAGGCTGC TTGTCATCGT CATGGCCCTC CTGGGAATTG
AGAAAATCCA TTAACCGTTC CTTGAAGGAA CGATAA

>Vigan.03G279500.01
MKLKSKKGWK SVVAVHLKGK SSTRFSLFRK VNSGGHGPGK TPVYLNVYDL TPVNGYVYWA GLGIYHSGVE VHGVEYAFGA
HDYPTSGVFE VEPRQCPGFK FRKSILIGTT TLDSTRVREF MERQSANYNG DTYHLIVKNC NHFCKDICYK LTGKSIPTWV
NRLARLGSIC NCILPEALRI SGVGHDPNYE AEDNEKRRLR SGLNCLSSIS MRQKHLSTSS LFLQSPLRGC LSSSWPSWEL
RKSINRSLKE R*