VIGGS:GBrowse

Vigan.03G280000.01

Basic Information:

Name:	Vigan.03G280000.01 Multiple alignment Variant Information
Position:	Chr03:41899966..41902680 (- strand)
Length:	2715

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M8E3, Glycine max]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:41.59,29.25,45.23,28.17,108.78,63.20,35.72,15.60
Arabidopsis thaliana homolog:	AT1G45170.1

Automatic updates:

Name:	NM_001255259 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100785739 (LOC100785739), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:41899966..41900364 (- strand)
Length:	399
Type:	three_prime_UTR

Position:	Chr03:41900365..41900445 (- strand)
Length:	81
Type:	CDS

Position:	Chr03:41901889..41902248 (- strand)
Length:	360
Type:	CDS

Position:	Chr03:41902317..41902517 (- strand)
Length:	201
Type:	CDS

Position:	Chr03:41902518..41902680 (- strand)
Length:	163
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G280000.01
AGAAAACCCA GTAGTGAGGC CCACGAAAAC GAAGTAAAAG AATGTGGGCG CTAAAAAGCG TGAGGATTTT AACGATTTAT
TATTCCGCGT TTGGAGACAT CAGGCTGTGT TTGGCGCAAC CATTTTTCTC TTGTCTCTTC GCACTTCCCT TCCGTTGTTT
ACGATGAAGG CCACGCTCAA AGGCAAGTAC GACGTCGACA AAAACGGCGC CGCTTTCGCC ACCGTCGCCG TCAACGCCGC
CGACGTCAGG TTCCGTGCCT CCGTAACAGA AGCCACTTTC ATCAACGGCC CCAGCCTCAC CGGCTTGGCT CTCGCCGTCG
AGAAACCCGG CTCCTTCATC GTCGACTACA ACGTTCCCAA AAAGGACTTT CGGTTCCAGT TCATGAACAC GGTTAGGGTT
GGAGACAGGG CGTTGAATTT GACCTACGTG CACAGCAGGG GGGATAACCG GACTGTACTG GACGGCACCT TTGTGGTGGA
TCCCGCGAAC AAGGTTTCGG CGAATTACGC GCTGGACTCG GGGAACTGCA AGTTGAAGTA TAGTTATGTT CACAAGGGGT
TGACCACTAT TGAACCCACC TATGATGTGG CGAAGAACAC ATGGGATTTC GCCGTTTCGA GGAAGGTTTA CGGTGATGAC
TCGTTGAGGG CTTCATACCA GACATCCAGC AAGGTTTTGG GAGTTGAGTG GGCGCGGAAT CCTAAACACA ATGCTGGATT
CAAGATTATA GCATCTGTTA ACTTGGCTGA GGAGTTGAAA GCGCCCAAAC TTATTGCTGA GACCACATGG AATTTTGAGA
TGTAGCTTGA TTCCAATATA TTGTTTCAAT TGCTTGATAG GTTTACTGTC AAGTTTTGAA GGCTTTTTCG ATCACACCAT
TGGGCATATT TTGCCTCTGA ATATTATATT ACATGCTTGA TAGTATTTTG ATCATGTTAT GAGCAATCTG GCATTAATTG
TCCACCTTCA ACTTCGCATT TGATTTTTAA ACTATTCCTG AATTTTCCCC ACATTACAAC ATCCTATAAT TGCTTGCCAA
TAAAATATGG GCACTTTTAT TTTCATAGAA GTTATTTTAT GTAGCTTTTC TGTTTGATCT ATCCTTTTTC CGTTCTTACT
TTAATGTTTG AAGGATATCT TGTTCTATCA GGACTTGTGG AGCTGGTATT TTTCAATGTA AGTTCGAAGT TTACAACATA
TTTG

[show][hide][copy]CDS

>Vigan.03G280000.01
ATGAAGGCCA CGCTCAAAGG CAAGTACGAC GTCGACAAAA ACGGCGCCGC TTTCGCCACC GTCGCCGTCA ACGCCGCCGA
CGTCAGGTTC CGTGCCTCCG TAACAGAAGC CACTTTCATC AACGGCCCCA GCCTCACCGG CTTGGCTCTC GCCGTCGAGA
AACCCGGCTC CTTCATCGTC GACTACAACG TTCCCAAAAA GGACTTTCGG TTCCAGTTCA TGAACACGGT TAGGGTTGGA
GACAGGGCGT TGAATTTGAC CTACGTGCAC AGCAGGGGGG ATAACCGGAC TGTACTGGAC GGCACCTTTG TGGTGGATCC
CGCGAACAAG GTTTCGGCGA ATTACGCGCT GGACTCGGGG AACTGCAAGT TGAAGTATAG TTATGTTCAC AAGGGGTTGA
CCACTATTGA ACCCACCTAT GATGTGGCGA AGAACACATG GGATTTCGCC GTTTCGAGGA AGGTTTACGG TGATGACTCG
TTGAGGGCTT CATACCAGAC ATCCAGCAAG GTTTTGGGAG TTGAGTGGGC GCGGAATCCT AAACACAATG CTGGATTCAA
GATTATAGCA TCTGTTAACT TGGCTGAGGA GTTGAAAGCG CCCAAACTTA TTGCTGAGAC CACATGGAAT TTTGAGATGT
AG

[show][hide][copy]PROTEIN

>Vigan.03G280000.01
MKATLKGKYD VDKNGAAFAT VAVNAADVRF RASVTEATFI NGPSLTGLAL AVEKPGSFIV DYNVPKKDFR FQFMNTVRVG
DRALNLTYVH SRGDNRTVLD GTFVVDPANK VSANYALDSG NCKLKYSYVH KGLTTIEPTY DVAKNTWDFA VSRKVYGDDS
LRASYQTSSK VLGVEWARNP KHNAGFKIIA SVNLAEELKA PKLIAETTWN FEM*