GBrowse Details

Vigan.03G288800.01

Basic Information:
Name: Vigan.03G288800.01
Multiple alignment
Variant Information
Position: Chr03:42668092..42673706 (- strand)
Length: 5615
Functional Information:
Description: Similar to Beta-galactosidase. [Q9M5J3, Vigna radiata var. radiata]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
InterPro: Glycoside hydrolase, family 35 (IPR001944)
Galactose-binding domain-like (IPR008979)
Glycoside hydrolase, catalytic domain (IPR013781)
Glycoside hydrolase, superfamily (IPR017853)
Glycoside hydrolase, family 35, conserved site (IPR019801)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,4.67,12.62,11.16,7.83,49.16,42.74,41.67
Arabidopsis thaliana homolog: AT1G31740.1, AT1G45130.1, AT1G77410.1, AT2G16730.1, AT2G28470.1, AT2G32810.1, AT3G13750.1, AT3G52840.1, AT4G26140.1, AT4G35010.1, AT4G36360.1, AT4G38590.2, AT5G20710.1, AT5G56870.1, AT5G63800.1, AT5G63810.1
Automatic updates:
Name: NM_001278975 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum beta-galactosidase 5-like (LOC101500441), mRNA.
PubMed ID: 23731125 NCBI(pubmed)
17110120 NCBI(pubmed)
Status: Known Variant
Name: NM_001317326 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata beta-galactosidase 5-like (LOC106764786), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:42668092..42668469 (- strand)
Length: 378
Type: three_prime_UTR
Position: Chr03:42668470..42668614 (- strand)
Length: 145
Type: CDS
Position: Chr03:42669082..42669284 (- strand)
Length: 203
Type: CDS
Position: Chr03:42669373..42669486 (- strand)
Length: 114
Type: CDS
Position: Chr03:42669565..42669672 (- strand)
Length: 108
Type: CDS
Position: Chr03:42669774..42669883 (- strand)
Length: 110
Type: CDS
Position: Chr03:42669958..42670067 (- strand)
Length: 110
Type: CDS
Position: Chr03:42670308..42670486 (- strand)
Length: 179
Type: CDS
Position: Chr03:42670629..42670793 (- strand)
Length: 165
Type: CDS
Position: Chr03:42670893..42671011 (- strand)
Length: 119
Type: CDS
Position: Chr03:42671240..42671327 (- strand)
Length: 88
Type: CDS
Position: Chr03:42671417..42671522 (- strand)
Length: 106
Type: CDS
Position: Chr03:42671614..42671702 (- strand)
Length: 89
Type: CDS
Position: Chr03:42671857..42672000 (- strand)
Length: 144
Type: CDS
Position: Chr03:42672430..42672522 (- strand)
Length: 93
Type: CDS
Position: Chr03:42672644..42672710 (- strand)
Length: 67
Type: CDS
Position: Chr03:42672810..42672922 (- strand)
Length: 113
Type: CDS
Position: Chr03:42673012..42673107 (- strand)
Length: 96
Type: CDS
Position: Chr03:42673240..42673410 (- strand)
Length: 171
Type: CDS
Position: Chr03:42673411..42673706 (- strand)
Length: 296
Type: five_prime_UTR


>Vigan.03G288800.01
TGTAGTTTCA AACTCTCGGA CCAAAGCAAA AAACAGTCCA AATACCAAAA CAAAACATAA ATAGTAAAAT AAAACACAAT
TCCCTGACAT GTGCGGAACT CTCAGGAAGT AGCAGTTGGT ACCACTACTA GCAGAAAGAA TCACAGACAA AAGCACTATG
GTCTTAGGTA CACAGCTTTA GATCAGATTC AAAGAAACAG ACAGCAGAAC CCATACCTCA AACTCTCTCT CTCTTGTCTT
AAATACTTTC AAAACTTTCC CTCCATTCAG TTGTAGGGGG AAGAAAGCAA GAAGCTATGG AAACCATCTC AGTTTCCAAG
CTTCTAGTAC TTGTTTTCAC CATCTTGTTT GTGGGTTCTG AGTTGATCCA TTGCAGTGTC ACTTATGATA GGAAGGCCAT
TATCATCAAT GGCCAAAGGA GAATCCTCAT ATCTGGTTCC ATTCACTACC CCAGAAGCAC TCCTGAAATG TGGGAGGATC
TAATCAGGAA GGCCAAAGGT GGAGGTCTTG ATGCCATTGA CACTTATGTC TTCTGGAATG TTCATGAACC ATCTCCTGGC
ATTTACAATT TTGAAGGGAG GTACGATCTG GTACGGTTCA TTAAGACAGT GCAGAGGGTG GGGCTCTATG TCCATCTTCG
GATTGGACCT TATGTGTGTG CAGAGTGGAA CTTTGGAGGG TTTCCTGTTT GGTTGAAGTA TGTTCCTGGC ATCAGCTTCA
GAACAGATAA TGGCCCTTTC AAGGCTGCAA TGCAAGGTTT CACTCAGAAG ATAGTCCAGA TGATGAAGAA TGAAAAGCTA
TTTCAGTCTC AGGGTGGTCC AATCATTCTT TCTCAGATTG AAAATGAGTA TGGACCAGAA AGCAAGCAAT TGGGAGGTGC
TGGTTATGCA TACACAAACT GGGCTGCAAA GATGGCTGTT GGATTGAACA CAGGAGTTCC CTGGGTGATG TGCAAGCAAG
ACGATGCCCC AGATCCAGTG ATAAATGCCT GTAATGGTTT CTATTGTGAT TATTTCTCCC CAAATAAACC ATACAAGCCT
ACCCTTTGGA CTGAATCTTG GAGTGGCTGG TTTACAGAGT TTGGTGGTCC AATTTACCAG CGACCAGTGC AGGATCTAGC
TTTTGCAGTT GCTCGTTTCA TTCAAAAGGG TGGCTCATAC ATCAATTATT ACATGTACCA TGGAGGAACT AATTTTGGAA
GATCAGCTGG AGGGCCATTC ATTACCACAA GCTATGACTA TGATGCTCCG ATTGATGAAT ATGGTTTGAT CAGGGAACCT
AAATATGGTC ATTTGATGGA CCTTCATAAA GCTATTAAGC AATGTGAACG TGCTTTGGTT TCTTCAGATC CCACTGTCAC
ATCATTAGGA ACGTATGAGC AGGCTCATGT GTTCTCTTCA AAAAATGGAG CATGTGCAGC TTTTCTGGCA AACTACCATT
CCAATTCTGC TGCAAGAGTG ACCTTCAATA ACAGGAAATA TGACTTGCCT CCTTGGTCCA TAAGCATCCT CCCCGATTGT
AAAACAGATG TTTTCAACAC TGCAAGAGTG AGGTTTCAAA CTACAAAGAT ACAAATGTTG CCTAGCAACT CTAAGTTGTT
CTCATGGGAG ACGTATGATG AAGATGTATC TTCACTATCA GAAAGTTCAA AGATCACAGC TTCTGGACTA TTAGAACAGC
TAAATGCCAC CAGAGACACT AGTGACTATC TATGGTATAT AACCAGCGTT GACATTACTT CATCAGAATC CTTTCTTAGA
GGGGGGAACA AGCCCAGCAT CAGTGTGCAT TCAGCAGGCC ATGCTGTCCA CGTGTTCATC AACGGTCAAT TTTTAGGCTC
AGCTTTTGGG ACAAGTGAAG ACAGAAGTTG CACATTCAAT GGCCCTGTCA ACCTACGTGC TGGAACCAAT AAAATAGCCC
TTCTCAGTGT AGCTGTTGGA TTACCCAATG TTGGATTCCA TTTTGAAACA TGGAAAGCTG GGATCACAGG AGTTTTGCTT
CATGGACTTG ACCATGGACA GAAGGATTTG ACATGGCAGA AATGGTCATA CCAGATTGGC CTAAAAGGGG AGGCTATGAA
TTTGGTGTCT CCAAATGGGG TTTCATCTGT TGACTGGGTG AGAGACTCTC TTGATGTCCG AAGCCAGTCA CAGTTGAAAT
GGCACAAGGC TTATTTCAAC GCACCTGATG GAGTTGAACC ATTGGCCTTG GACCTTAGCA GTATGGGAAA GGGTCAGGTA
TGGATCAATG GACAAAGCAT AGGGAGATAT TGGATGGTTT ATGCAAAGGG TGCTTGTAGT TCTTGCAACT ATGCTGGGAC
ATACCGGCCT GCAAAATGCC AACTTGGTTG TGGACAACCT ACGCAACAAT GGTATCACGT GCCAAGATCA TGGTTAAAGC
CAACAAATAA CTTGATAGTA GTGCTTGAAG AACTGGGTGG CAATCCTTGG AAAATATCTC TACAGAAGAG GACAATACAT
ACACCAGCAT CTAGTGAACC CAATTCAAAG AACTGAAAGA ACGTGAATAT TAGTAGCTAC ATGGTAATAA TCGACATAAA
AAAATTGGAT GTCTATTTGT GCAGTTCTCT GTCTTCCATT GGCACTGGTA GATCATAATG TTGATGAAAT TTGCTACACC
TGGTAGGAGT TTGGTTCAAC CATTGATGTG TTTATCTCCA ATTCCACATT CTCCTGATCT TGCATCTGAT GGAGAATGAC
AGATTACACA AAAAGTGTGG CAAATTTGCT TTTTAATTTA TTTTCTGGAC TTAACTGTCC TTATGTATGT GTTACTGGAA
ATGAAAAAAA AATTACAAAA TTCAGACTTG TGCTCATATC ACTCTTGTAA TCTGTATATC TCAATACACG CAATGCAAGT
ATCAAGTATA TCAG

>Vigan.03G288800.01
ATGGAAACCA TCTCAGTTTC CAAGCTTCTA GTACTTGTTT TCACCATCTT GTTTGTGGGT TCTGAGTTGA TCCATTGCAG
TGTCACTTAT GATAGGAAGG CCATTATCAT CAATGGCCAA AGGAGAATCC TCATATCTGG TTCCATTCAC TACCCCAGAA
GCACTCCTGA AATGTGGGAG GATCTAATCA GGAAGGCCAA AGGTGGAGGT CTTGATGCCA TTGACACTTA TGTCTTCTGG
AATGTTCATG AACCATCTCC TGGCATTTAC AATTTTGAAG GGAGGTACGA TCTGGTACGG TTCATTAAGA CAGTGCAGAG
GGTGGGGCTC TATGTCCATC TTCGGATTGG ACCTTATGTG TGTGCAGAGT GGAACTTTGG AGGGTTTCCT GTTTGGTTGA
AGTATGTTCC TGGCATCAGC TTCAGAACAG ATAATGGCCC TTTCAAGGCT GCAATGCAAG GTTTCACTCA GAAGATAGTC
CAGATGATGA AGAATGAAAA GCTATTTCAG TCTCAGGGTG GTCCAATCAT TCTTTCTCAG ATTGAAAATG AGTATGGACC
AGAAAGCAAG CAATTGGGAG GTGCTGGTTA TGCATACACA AACTGGGCTG CAAAGATGGC TGTTGGATTG AACACAGGAG
TTCCCTGGGT GATGTGCAAG CAAGACGATG CCCCAGATCC AGTGATAAAT GCCTGTAATG GTTTCTATTG TGATTATTTC
TCCCCAAATA AACCATACAA GCCTACCCTT TGGACTGAAT CTTGGAGTGG CTGGTTTACA GAGTTTGGTG GTCCAATTTA
CCAGCGACCA GTGCAGGATC TAGCTTTTGC AGTTGCTCGT TTCATTCAAA AGGGTGGCTC ATACATCAAT TATTACATGT
ACCATGGAGG AACTAATTTT GGAAGATCAG CTGGAGGGCC ATTCATTACC ACAAGCTATG ACTATGATGC TCCGATTGAT
GAATATGGTT TGATCAGGGA ACCTAAATAT GGTCATTTGA TGGACCTTCA TAAAGCTATT AAGCAATGTG AACGTGCTTT
GGTTTCTTCA GATCCCACTG TCACATCATT AGGAACGTAT GAGCAGGCTC ATGTGTTCTC TTCAAAAAAT GGAGCATGTG
CAGCTTTTCT GGCAAACTAC CATTCCAATT CTGCTGCAAG AGTGACCTTC AATAACAGGA AATATGACTT GCCTCCTTGG
TCCATAAGCA TCCTCCCCGA TTGTAAAACA GATGTTTTCA ACACTGCAAG AGTGAGGTTT CAAACTACAA AGATACAAAT
GTTGCCTAGC AACTCTAAGT TGTTCTCATG GGAGACGTAT GATGAAGATG TATCTTCACT ATCAGAAAGT TCAAAGATCA
CAGCTTCTGG ACTATTAGAA CAGCTAAATG CCACCAGAGA CACTAGTGAC TATCTATGGT ATATAACCAG CGTTGACATT
ACTTCATCAG AATCCTTTCT TAGAGGGGGG AACAAGCCCA GCATCAGTGT GCATTCAGCA GGCCATGCTG TCCACGTGTT
CATCAACGGT CAATTTTTAG GCTCAGCTTT TGGGACAAGT GAAGACAGAA GTTGCACATT CAATGGCCCT GTCAACCTAC
GTGCTGGAAC CAATAAAATA GCCCTTCTCA GTGTAGCTGT TGGATTACCC AATGTTGGAT TCCATTTTGA AACATGGAAA
GCTGGGATCA CAGGAGTTTT GCTTCATGGA CTTGACCATG GACAGAAGGA TTTGACATGG CAGAAATGGT CATACCAGAT
TGGCCTAAAA GGGGAGGCTA TGAATTTGGT GTCTCCAAAT GGGGTTTCAT CTGTTGACTG GGTGAGAGAC TCTCTTGATG
TCCGAAGCCA GTCACAGTTG AAATGGCACA AGGCTTATTT CAACGCACCT GATGGAGTTG AACCATTGGC CTTGGACCTT
AGCAGTATGG GAAAGGGTCA GGTATGGATC AATGGACAAA GCATAGGGAG ATATTGGATG GTTTATGCAA AGGGTGCTTG
TAGTTCTTGC AACTATGCTG GGACATACCG GCCTGCAAAA TGCCAACTTG GTTGTGGACA ACCTACGCAA CAATGGTATC
ACGTGCCAAG ATCATGGTTA AAGCCAACAA ATAACTTGAT AGTAGTGCTT GAAGAACTGG GTGGCAATCC TTGGAAAATA
TCTCTACAGA AGAGGACAAT ACATACACCA GCATCTAGTG AACCCAATTC AAAGAACTGA 

>Vigan.03G288800.01
METISVSKLL VLVFTILFVG SELIHCSVTY DRKAIIINGQ RRILISGSIH YPRSTPEMWE DLIRKAKGGG LDAIDTYVFW
NVHEPSPGIY NFEGRYDLVR FIKTVQRVGL YVHLRIGPYV CAEWNFGGFP VWLKYVPGIS FRTDNGPFKA AMQGFTQKIV
QMMKNEKLFQ SQGGPIILSQ IENEYGPESK QLGGAGYAYT NWAAKMAVGL NTGVPWVMCK QDDAPDPVIN ACNGFYCDYF
SPNKPYKPTL WTESWSGWFT EFGGPIYQRP VQDLAFAVAR FIQKGGSYIN YYMYHGGTNF GRSAGGPFIT TSYDYDAPID
EYGLIREPKY GHLMDLHKAI KQCERALVSS DPTVTSLGTY EQAHVFSSKN GACAAFLANY HSNSAARVTF NNRKYDLPPW
SISILPDCKT DVFNTARVRF QTTKIQMLPS NSKLFSWETY DEDVSSLSES SKITASGLLE QLNATRDTSD YLWYITSVDI
TSSESFLRGG NKPSISVHSA GHAVHVFING QFLGSAFGTS EDRSCTFNGP VNLRAGTNKI ALLSVAVGLP NVGFHFETWK
AGITGVLLHG LDHGQKDLTW QKWSYQIGLK GEAMNLVSPN GVSSVDWVRD SLDVRSQSQL KWHKAYFNAP DGVEPLALDL
SSMGKGQVWI NGQSIGRYWM VYAKGACSSC NYAGTYRPAK CQLGCGQPTQ QWYHVPRSWL KPTNNLIVVL EELGGNPWKI
SLQKRTIHTP ASSEPNSKN*