VIGGS:GBrowse

Vigan.03G294100.01

Basic Information:

Name:	Vigan.03G294100.01 Multiple alignment Variant Information
Position:	Chr03:43110457..43112506 (+ strand)
Length:	2050

Functional Information:

Description:	Similar to cinnamyl alcohol dehydrogenase 6-like. [XP_004499301.1, Cicer arietinum]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: zinc ion binding (GO:0008270)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro:	Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
	Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
	GroES (chaperonin 10)-like (IPR011032)
	Alcohol dehydrogenase, C-terminal (IPR013149)
	Alcohol dehydrogenase GroES-like (IPR013154)
	NAD(P)-binding domain (IPR016040)
	Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:2.71,14.59,202.52,389.65,2.44,172.71,8.01,22.69

Automatic updates:

Name:	NM_001255385 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative cinnamyl alcohol dehydrogenase (LOC100820588), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001255475 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative cinnamyl alcohol dehydrogenase (LOC100779140), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:43110457..43110685 (+ strand)
Length:	229
Type:	five_prime_UTR

Position:	Chr03:43110686..43110780 (+ strand)
Length:	95
Type:	CDS

Position:	Chr03:43110860..43110973 (+ strand)
Length:	114
Type:	CDS

Position:	Chr03:43111057..43111284 (+ strand)
Length:	228
Type:	CDS

Position:	Chr03:43111391..43111679 (+ strand)
Length:	289
Type:	CDS

Position:	Chr03:43111762..43111915 (+ strand)
Length:	154
Type:	CDS

Position:	Chr03:43112070..43112269 (+ strand)
Length:	200
Type:	CDS

Position:	Chr03:43112270..43112506 (+ strand)
Length:	237
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G294100.01
GCATGCAACA GATAATAAAA TAAAAGGGCC GAAGAAAATG ATAGGGACAC GACATGTGGT GAGATTTAAT GTAAAAAGAC
TGTAACTTTT TAATTTTACC TTTTTGTGTC TATAAAATGT GTAAGGTTGG GTGGCATTGA GTTCATCACA CTCTCTCGGC
TATCACTACT GTGGAGTTCA CTGCTTCCAA AGTCACAAAC AGAGAAAGTG TAATCTTTTT CCCATCACGA TGACTACAAC
AACACCGAAT CACACAGTAA CCGTATCTGG GTGGGCAGCA CATGATACTT CCGGCAAGAT TACCCCCTAC ACCTTCAAAA
GAAGGGAGAA CGGTGTTAAC GATGTTACCA TAAAGATCTT GTACTGTGGA ATCTGCCACA CGGACCTCCA CTATGCTAAA
GATGAATGGG GCATCACCAA GTACCCTGTG GTACCTGGGC ACGAAATCAT TGGGGTGATA ACCAAGACAG GAAGCGATGT
GCAGGGGTTC AAGGAAGGAG ACAGAGTGGG TGTGGGGTGT ATGGCAGCTT CGTGTTTGGA TTGTGAACAC TGCAAGACAG
ATCAGGAAAA CTACTGTGAT AAGATGGTGC TTATATACAA CGGAATCTTC TGGGACGGAA GCATCACCTA TGGTGGCTAC
TCCCAGCTCA TTATTGCAGA TTACAGGTAT GTGGTACACA TTCCGGAGAG CCTACCGATG GATGCGGCGG CTCCTCTACT
GTGCGCCGGA ATAACAGTGT TCACTCCTTT GAAAGATCAC GATTTGGTGG CAACGCCGGG GAAAAAGATT GGGGTGGTGG
GTTTGGGAGG GCTGGGACAC TTGGCCGTTA AATTTGGGAA GGCATTTGGG CACCATGTTA CCGTCATAAG CACTTCTCCT
TCCAAAGAAG CTGAAGCGAA GCAACGTTTG GGTGCTGATG ATTTCATAAT CAGCTCCAAC CCTAAACAAT TACAGGATGC
AAGGAGAAGC CTCGATTTCA TACTGGACAC TGTTTCTGGA GACCACCCTC TGTTACCCAT CTTGGAATTG CTGAAAATAA
ACGGCACCTT ATTTCTGGTG GGAGCTCCGG ACAAGCCCCT CCAACTGCCG GCTTTCCCGT TGATTTTTGG AAAGAGAGCA
GTAAAAGGTG GCATCATAGG AGGAATAAAA GAGACTCAGG AAATGCTGGA TCTGTGTGCG AAGTACAACA TAACGAGTGA
CATTGAGGTA ATCACACCAG ACAAAATCAA CGAGGCTATT GATCGTCTTG CGAAGAATGA TGTTCGGTAC CGTTTCGTGA
TTGACATTGG TGCTGCCTCC AGCGTGTAGA CTTGAATATG TATCTGCTGT TTTTTCCAGA ATAAATGGCA GAAACTCGTC
CCTGTTTTGA TGGATTCCAT ATCTACAATT CCATCACTAA ATCATTCGTT TATGTCGATG CCATTTGGTA GCCTTCATGC
TGTATTTCCA TTTCGTTTAT GAATAAGATG TTGAGTTTTA GGTACACCTA CAAATAACTA CCATGCCCGT ATTTAACATG
TGTTCATTTC TTTTCTTTTT TATTTA

[show][hide][copy]CDS

>Vigan.03G294100.01
ATGACTACAA CAACACCGAA TCACACAGTA ACCGTATCTG GGTGGGCAGC ACATGATACT TCCGGCAAGA TTACCCCCTA
CACCTTCAAA AGAAGGGAGA ACGGTGTTAA CGATGTTACC ATAAAGATCT TGTACTGTGG AATCTGCCAC ACGGACCTCC
ACTATGCTAA AGATGAATGG GGCATCACCA AGTACCCTGT GGTACCTGGG CACGAAATCA TTGGGGTGAT AACCAAGACA
GGAAGCGATG TGCAGGGGTT CAAGGAAGGA GACAGAGTGG GTGTGGGGTG TATGGCAGCT TCGTGTTTGG ATTGTGAACA
CTGCAAGACA GATCAGGAAA ACTACTGTGA TAAGATGGTG CTTATATACA ACGGAATCTT CTGGGACGGA AGCATCACCT
ATGGTGGCTA CTCCCAGCTC ATTATTGCAG ATTACAGGTA TGTGGTACAC ATTCCGGAGA GCCTACCGAT GGATGCGGCG
GCTCCTCTAC TGTGCGCCGG AATAACAGTG TTCACTCCTT TGAAAGATCA CGATTTGGTG GCAACGCCGG GGAAAAAGAT
TGGGGTGGTG GGTTTGGGAG GGCTGGGACA CTTGGCCGTT AAATTTGGGA AGGCATTTGG GCACCATGTT ACCGTCATAA
GCACTTCTCC TTCCAAAGAA GCTGAAGCGA AGCAACGTTT GGGTGCTGAT GATTTCATAA TCAGCTCCAA CCCTAAACAA
TTACAGGATG CAAGGAGAAG CCTCGATTTC ATACTGGACA CTGTTTCTGG AGACCACCCT CTGTTACCCA TCTTGGAATT
GCTGAAAATA AACGGCACCT TATTTCTGGT GGGAGCTCCG GACAAGCCCC TCCAACTGCC GGCTTTCCCG TTGATTTTTG
GAAAGAGAGC AGTAAAAGGT GGCATCATAG GAGGAATAAA AGAGACTCAG GAAATGCTGG ATCTGTGTGC GAAGTACAAC
ATAACGAGTG ACATTGAGGT AATCACACCA GACAAAATCA ACGAGGCTAT TGATCGTCTT GCGAAGAATG ATGTTCGGTA
CCGTTTCGTG ATTGACATTG GTGCTGCCTC CAGCGTGTAG

[show][hide][copy]PROTEIN

>Vigan.03G294100.01
MTTTTPNHTV TVSGWAAHDT SGKITPYTFK RRENGVNDVT IKILYCGICH TDLHYAKDEW GITKYPVVPG HEIIGVITKT
GSDVQGFKEG DRVGVGCMAA SCLDCEHCKT DQENYCDKMV LIYNGIFWDG SITYGGYSQL IIADYRYVVH IPESLPMDAA
APLLCAGITV FTPLKDHDLV ATPGKKIGVV GLGGLGHLAV KFGKAFGHHV TVISTSPSKE AEAKQRLGAD DFIISSNPKQ
LQDARRSLDF ILDTVSGDHP LLPILELLKI NGTLFLVGAP DKPLQLPAFP LIFGKRAVKG GIIGGIKETQ EMLDLCAKYN
ITSDIEVITP DKINEAIDRL AKNDVRYRFV IDIGAASSV*