GBrowse Details

Vigan.04G004500.01

Basic Information:
Name: Vigan.04G004500.01
Multiple alignment
Variant Information
Position: Chr04:333046..336193 (- strand)
Length: 3148
Functional Information:
Description: Similar to Uncharacterized protein. [I1N5E5, Glycine max]
GO: Biological Process: transport (GO:0006810)
Biological Process: oligopeptide transport (GO:0006857)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Proton-dependent oligopeptide transporter family (IPR000109)
Major facilitator superfamily domain, general substrate transporter (IPR016196)
PTR2 family proton/oligopeptide symporter, conserved site (IPR018456)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.22,0.28,22.14,16.84,0.02,5.45,0.13,14.90
Arabidopsis thaliana homolog: AT5G13400.1
Automatic updates:
Name: KM399027 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max major facilitator superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM399037 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula major facilitator superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM399045 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris major facilitator superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:333046..333467 (- strand)
Length: 422
Type: three_prime_UTR
Position: Chr04:333468..334338 (- strand)
Length: 871
Type: CDS
Position: Chr04:334437..335017 (- strand)
Length: 581
Type: CDS
Position: Chr04:335296..335513 (- strand)
Length: 218
Type: CDS
Position: Chr04:335642..335867 (- strand)
Length: 226
Type: CDS
Position: Chr04:335868..336193 (- strand)
Length: 326
Type: five_prime_UTR


>Vigan.04G004500.01
CTTAGAAGTA ACTCTAGTCA AGGAAATGTA GGGTCCAAAC CTACACCACA ACTGATTTCT TTTCCTTTTA TTTTCCTGTC
TTGAAGAATT AATCAAGGTC TGAGCACATC CATAAGTAGA AGAGCAAGGC CAACCAAAGA AGTAGGAGAA GTTGGTGGCT
TTAGTGTATC CATATTTCAG AATAATTTTC TCCCACTCTT TGCTTTTTTT CATTGCTGAT TAGTGAAAGC TGAAGAGGTA
GATCCATGAC CCTTTTCATG TGTTGTGAGG TTTTGATCTG AAGATTGAGG AAAAGTAGTA GTAGGTAGTG TTGTGTGTTA
AGAGTGATGG ATAGCACAGA AATCAAGTCA CCAGCAGAAA GCTCCTTTGA AGGGACACCA GACACTTCAA TGAACAGAAA
GAAGCTAGCC ATATACTTCA TCGAATCTGA GGATAGAAGA ATGGCCTTTG GTCGTGGATA CACAGCAGGA TCTACACCAG
TTGATATCCA TGGCAAATCC ATTGTTGATC TTTCAAAAAC TGGTGGATGG ATTGCAGCCT TCTTTATATT TGGAAATGAA
ATGGCAGAAA GAATGGCTTA TTTTGGGCTT TCAGTGAACA TGGTTGCCTT CATGTTCTAT GTGATGCACA GACCATTCAC
GAGTTCATCC AACGCAGTGA ACAATTTCTT AGGGATATCA CAAGCTTCCT CGGTGTTGGG TGGATTTCTA GCAGATGCAT
ATCTTGGACG CTACTGGACA ATAGCTATCT TCACCACAAT CTATCTTGCA GGTTTGACAG GAATAACACT GTGTGCAACA
ATAGGGAAGT TTGTGCCGAA CCAAGCAGAG TGTGACCAAC TTTCTCTGCT GCTGGGAAAG TGCGAGCCAG CAAAAGCATG
GCAAATGACA TACCTTTACA CGTTTCTATA CATAACAGCG TTTGGAGCAG CAGGGATAAG GCCATGCGTG TCATCTTTTG
GAGCAGACCA GTTTGATGAG AGAAGCAAAA ACTACAAAGA ACACCTTGAC AGATTCTTCA ACTTCTTCTA TCTGTCAGTG
ACCATTGGAG CAATTGTGGC CTTCACAGGA GTGGTGTACG TGCAGATGCA ATATGGGTGG GGATCTGCAT TTGGGTCACT
CGCAATAGCC ATGGGAATAT CAAACATGGT CTTCTTCATA GGCACCCCTT TGTACAGACA CAGATTACCA GGAGGGAGTC
CTCTAACTAG GGTTGCTCAA GTTCTGGTGG CTGCATTTCG AAAGAGAAAT GCCCCTTTTT CAAGCAGTGA CTTCATAGGC
TTGTACGAGG TTCCTGGTAG ACACTCTGCT ATCAAGGGAA GTGGAAAAAT TCCTCACACT CCTCATTTCA GGTTTCTTGA
CAAGGCAGCT CTGGAACTGA AAGAAGACGG TGGAAATCCG AGTCCATGGA GGCTCTGCAC CGTGACTCAG GTTGAGGAAG
TGAAGATCCT TCTGAAACTG ATTCCCATAC CAGCCTGCAC AATCATGCTC AACGTCGTTC TCACAGAGTT TCTGACTCTC
TCAGTTCAGC AGGCATACAC TCTTAACACC CATTTGGGTC GTCTGAAACT CCCAGTCACA TGCATGCCCG TCTTCCCAGG
CCTAAGCATT TTCCTCATTC TATCTCTCTA CTACTCCCTT TTCGTCCCCA TTTTCCGACG CATCACCGGC CACCCACACG
GTGCCTCTCA ACTTCAGAGG GTAGGAATCG GCTTGGCTGT CTCCATTCTC TCAGTTGCAT GGGCTGCCAT ATTTGAACGA
TACAGAAGAA ACTACGCAAT AAGACATGAA TACGAGGCTA CTTTCCTCAC GCCCATGCCT AACCTCAGTG CTTATTGGCT
GTTGATTCAA TACTGTCTCA TTGGTGTGGC CGAAGTGTTC TGCATTGTCG GCCTCTTGGA GTTCCTTTAC GAGGAAGCCC
CCGATGCCAT GAAGAGCATA GGCTCTGCTT ATGCTGCACT CGCCGGTGGC TTGGGTTGTT TTGTGGCAAC TATTATAAAC
AACATCATTA AATCTGCCAC TGGGAACATC GATAAAGGAC AACCTTCTTG GTTGTCTCAG AACATCAACA CTGGCAGGTT
TGATTACTTC TACTGGCTTC TCACGGCTTT GAGCACGCTC AATTTTTTCA TCTTCGTATA TTCGGCTCGT AGATATAAGT
ACAGGGCACA GGAAGATCGT GAGATGGAGA AACATGAAAT GTCATACGTT GGAACATCCT AGTTTTCAAC ACAGTAAAAT
GCTGTCTTTG ATCCATTCAA TAACTTGTAA TGGTGTTCTC CTTGTGTGAT AACGCACACT AGTTAGGAGT ATTCTGCATG
AGATAATGAT TTCCTTCTGA AGGATAGTTA CTCCCTCAGG TAAACTTAGT TAAATTAAAC ACTTTCATGC TAGCAAAGAT
GATAAGAAAA AGAGAGAATT GCATAGATAT TGAGTAGTAT ACGAATTCTG CTTAATCTTT TAGAGTAGTT CAAAGCAGTT
TCTTGAGAAT ATAATATCAA GCAACTTTAT ATAAAAAAAA CTAGGGGCAG TTACTTCGTG CACCGATCAT TTTCTTTCTG
TACTCTATCA TTTCCGGAAT TTACTCTCCG GAACACAACC TCGGAAGTTT TTGATGGGTT AGTGCAGTTC ATGGCCCATC
TAAT

>Vigan.04G004500.01
ATGGATAGCA CAGAAATCAA GTCACCAGCA GAAAGCTCCT TTGAAGGGAC ACCAGACACT TCAATGAACA GAAAGAAGCT
AGCCATATAC TTCATCGAAT CTGAGGATAG AAGAATGGCC TTTGGTCGTG GATACACAGC AGGATCTACA CCAGTTGATA
TCCATGGCAA ATCCATTGTT GATCTTTCAA AAACTGGTGG ATGGATTGCA GCCTTCTTTA TATTTGGAAA TGAAATGGCA
GAAAGAATGG CTTATTTTGG GCTTTCAGTG AACATGGTTG CCTTCATGTT CTATGTGATG CACAGACCAT TCACGAGTTC
ATCCAACGCA GTGAACAATT TCTTAGGGAT ATCACAAGCT TCCTCGGTGT TGGGTGGATT TCTAGCAGAT GCATATCTTG
GACGCTACTG GACAATAGCT ATCTTCACCA CAATCTATCT TGCAGGTTTG ACAGGAATAA CACTGTGTGC AACAATAGGG
AAGTTTGTGC CGAACCAAGC AGAGTGTGAC CAACTTTCTC TGCTGCTGGG AAAGTGCGAG CCAGCAAAAG CATGGCAAAT
GACATACCTT TACACGTTTC TATACATAAC AGCGTTTGGA GCAGCAGGGA TAAGGCCATG CGTGTCATCT TTTGGAGCAG
ACCAGTTTGA TGAGAGAAGC AAAAACTACA AAGAACACCT TGACAGATTC TTCAACTTCT TCTATCTGTC AGTGACCATT
GGAGCAATTG TGGCCTTCAC AGGAGTGGTG TACGTGCAGA TGCAATATGG GTGGGGATCT GCATTTGGGT CACTCGCAAT
AGCCATGGGA ATATCAAACA TGGTCTTCTT CATAGGCACC CCTTTGTACA GACACAGATT ACCAGGAGGG AGTCCTCTAA
CTAGGGTTGC TCAAGTTCTG GTGGCTGCAT TTCGAAAGAG AAATGCCCCT TTTTCAAGCA GTGACTTCAT AGGCTTGTAC
GAGGTTCCTG GTAGACACTC TGCTATCAAG GGAAGTGGAA AAATTCCTCA CACTCCTCAT TTCAGGTTTC TTGACAAGGC
AGCTCTGGAA CTGAAAGAAG ACGGTGGAAA TCCGAGTCCA TGGAGGCTCT GCACCGTGAC TCAGGTTGAG GAAGTGAAGA
TCCTTCTGAA ACTGATTCCC ATACCAGCCT GCACAATCAT GCTCAACGTC GTTCTCACAG AGTTTCTGAC TCTCTCAGTT
CAGCAGGCAT ACACTCTTAA CACCCATTTG GGTCGTCTGA AACTCCCAGT CACATGCATG CCCGTCTTCC CAGGCCTAAG
CATTTTCCTC ATTCTATCTC TCTACTACTC CCTTTTCGTC CCCATTTTCC GACGCATCAC CGGCCACCCA CACGGTGCCT
CTCAACTTCA GAGGGTAGGA ATCGGCTTGG CTGTCTCCAT TCTCTCAGTT GCATGGGCTG CCATATTTGA ACGATACAGA
AGAAACTACG CAATAAGACA TGAATACGAG GCTACTTTCC TCACGCCCAT GCCTAACCTC AGTGCTTATT GGCTGTTGAT
TCAATACTGT CTCATTGGTG TGGCCGAAGT GTTCTGCATT GTCGGCCTCT TGGAGTTCCT TTACGAGGAA GCCCCCGATG
CCATGAAGAG CATAGGCTCT GCTTATGCTG CACTCGCCGG TGGCTTGGGT TGTTTTGTGG CAACTATTAT AAACAACATC
ATTAAATCTG CCACTGGGAA CATCGATAAA GGACAACCTT CTTGGTTGTC TCAGAACATC AACACTGGCA GGTTTGATTA
CTTCTACTGG CTTCTCACGG CTTTGAGCAC GCTCAATTTT TTCATCTTCG TATATTCGGC TCGTAGATAT AAGTACAGGG
CACAGGAAGA TCGTGAGATG GAGAAACATG AAATGTCATA CGTTGGAACA TCCTAG

>Vigan.04G004500.01
MDSTEIKSPA ESSFEGTPDT SMNRKKLAIY FIESEDRRMA FGRGYTAGST PVDIHGKSIV DLSKTGGWIA AFFIFGNEMA
ERMAYFGLSV NMVAFMFYVM HRPFTSSSNA VNNFLGISQA SSVLGGFLAD AYLGRYWTIA IFTTIYLAGL TGITLCATIG
KFVPNQAECD QLSLLLGKCE PAKAWQMTYL YTFLYITAFG AAGIRPCVSS FGADQFDERS KNYKEHLDRF FNFFYLSVTI
GAIVAFTGVV YVQMQYGWGS AFGSLAIAMG ISNMVFFIGT PLYRHRLPGG SPLTRVAQVL VAAFRKRNAP FSSSDFIGLY
EVPGRHSAIK GSGKIPHTPH FRFLDKAALE LKEDGGNPSP WRLCTVTQVE EVKILLKLIP IPACTIMLNV VLTEFLTLSV
QQAYTLNTHL GRLKLPVTCM PVFPGLSIFL ILSLYYSLFV PIFRRITGHP HGASQLQRVG IGLAVSILSV AWAAIFERYR
RNYAIRHEYE ATFLTPMPNL SAYWLLIQYC LIGVAEVFCI VGLLEFLYEE APDAMKSIGS AYAALAGGLG CFVATIINNI
IKSATGNIDK GQPSWLSQNI NTGRFDYFYW LLTALSTLNF FIFVYSARRY KYRAQEDREM EKHEMSYVGT S*