GBrowse Details

Vigan.04G007800.01

Basic Information:
Name: Vigan.04G007800.01
Multiple alignment
Variant Information
Position: Chr04:689218..693412 (- strand)
Length: 4195
Functional Information:
Description: Similar to protein. [F2D1W4, Hordeum vulgare var. distichum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.07,1.13,3.64,3.70,3.19,3.29,9.55,4.95
Arabidopsis thaliana homolog: AT1G67060.1
Automatic updates:
Name: NM_001249258 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306005 (LOC100306005), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:689218..689889 (- strand)
Length: 672
Type: three_prime_UTR
Position: Chr04:689890..690034 (- strand)
Length: 145
Type: CDS
Position: Chr04:690357..690462 (- strand)
Length: 106
Type: CDS
Position: Chr04:690560..690589 (- strand)
Length: 30
Type: CDS
Position: Chr04:690663..690746 (- strand)
Length: 84
Type: CDS
Position: Chr04:690849..690873 (- strand)
Length: 25
Type: CDS
Position: Chr04:690980..691101 (- strand)
Length: 122
Type: CDS
Position: Chr04:691414..691498 (- strand)
Length: 85
Type: CDS
Position: Chr04:691987..692082 (- strand)
Length: 96
Type: CDS
Position: Chr04:693163..693252 (- strand)
Length: 90
Type: CDS
Position: Chr04:693253..693412 (- strand)
Length: 160
Type: five_prime_UTR


>Vigan.04G007800.01
CTCCCTCTCT CTCTTCGTTG TGATTCCCAC ACCCCACCAA ACCAAACGCT TCCTTCAATC ATAGGATTGA TTCAACACAA
AACCCATCAT TATCTTCCAT CAAAGTTCAA TCCTTTTTCA CTTCGATTCC TCATAGCCGT TTCGTTTGAG CTCATCAGCT
ATGCCCAACT GGGAGCTCAG GAACTGTTGT GACCATGACC AGAAGGTCTT CATTGGTTGT GTTGCTGGCT TCACCGTTGT
AATCCTTGTG CTATGGAGGA CCTTTGTACT TACACCTTTT AAGCTCATCA CTGTGTTTCT GCATGAAGCT AGTCATGCCA
TTGCTTGCTG GCTCACTTGT GGCAAGGTGG AAGGAATTCA GGTTCACGCA AATGAGGGTG GGGTAACCCA GACACGTGGT
GGAATATACT GGGTGATCTT GCCTGCTGGA TATCTTGGTT CGTCATTTTG GGGAATGGCT TTGATACTTG CATCCACAAA
TCTTCTCACC GCAAAAATTG CTGCTGGTTG CTTTATTGCT GCTCTGATTG TTGTGCTCTT TCTTGCAAAA AATTGGACAC
TTCGAGGACT ATGTATTGGA TTTATTGTTT TTATTGCTGT TATTTGGGTT CTGCAAGAGA AAACAACAGT TCATGTCCTT
CGCTATGTCA TTCTCTTTAT TGGTGTCATG AACAGTTTGT TTTCAGTTTA TGATATTTAC GATGATTTAA TATCTCGAAG
AGTCAACTCT AGTGACGCTG AAAAGTTTGC AGAAGTTTGT CCATGCCCTT GTAATGGTTT TGGCTGGGGA GTTATTTGGG
GGATGATATC ATTTGCATTT CTTTGCGGAT CTTTGTACCT TGGCTTGGTC ATATTATCAG GTAAATATGA AGAGTTTAAT
TTAGTATGCT TTCAGTGTAA AATTTTCTGT ATGATCAATC TACTAGAAAT TACTCAGATA TGACTTTTAA ATTAAGTATT
ACAAGAGTAA AAAATCTTTT TATACTTGTC AATCCAGGAA CGATGACAGT GTAAAAAATT CATATTTTTA ATATATTTTA
ATTAAATTCA ATATACAATG TCTCGAGGAG TTAACTAATC AGTTGAATAC ATGGCTCCTC CCAAATGAAA TTGAACTTGA
AAAATTAGTC TGATACAGTG TATAATTTCA TTCATATGTC AACAATCTGT TCAAACTTAG TAGGTGTTAA GATTTTAAAA
GCCTTAAAGT AGTTTTCTGA ACTGAAACAG ATATATACGG ACACACAAAC ACACAAGACA ACCACATTTT ATGACAATGA
TATATTTATG CATGTCTCTT ATGTTTTTTG TTTACAGGTT GAGAAAATTG TATGCGAGAG GTTTGTTAGT GCAGAGAGCT
TGACCAACTT CTGTTAATGC TTTGTATTCT GATTGTTTGT TCTTTTTTTT TTTCTTTTTT TTTTGTGATG GGAGTTTACT
CTCTGTTACT CCCATGCCTT CATTCTTTGC ATCCCATTTT GGGGTGCTTG ATTATACATG ATTGCTTTTG TATAGAAAAT
CAGAAACTAA TACAGGCGAG TACTTCAATA GATATATGTG CCTTAGACAT TTGCAGCTAC TTTTCATCCC CTTTTTTTTT
CTTTCTAAAT TTGTT

>Vigan.04G007800.01
ATGCCCAACT GGGAGCTCAG GAACTGTTGT GACCATGACC AGAAGGTCTT CATTGGTTGT GTTGCTGGCT TCACCGTTGT
AATCCTTGTG CTATGGAGGA CCTTTGTACT TACACCTTTT AAGCTCATCA CTGTGTTTCT GCATGAAGCT AGTCATGCCA
TTGCTTGCTG GCTCACTTGT GGCAAGGTGG AAGGAATTCA GGTTCACGCA AATGAGGGTG GGGTAACCCA GACACGTGGT
GGAATATACT GGGTGATCTT GCCTGCTGGA TATCTTGGTT CGTCATTTTG GGGAATGGCT TTGATACTTG CATCCACAAA
TCTTCTCACC GCAAAAATTG CTGCTGGTTG CTTTATTGCT GCTCTGATTG TTGTGCTCTT TCTTGCAAAA AATTGGACAC
TTCGAGGACT ATGTATTGGA TTTATTGTTT TTATTGCTGT TATTTGGGTT CTGCAAGAGA AAACAACAGT TCATGTCCTT
CGCTATGTCA TTCTCTTTAT TGGTGTCATG AACAGTTTGT TTTCAGTTTA TGATATTTAC GATGATTTAA TATCTCGAAG
AGTCAACTCT AGTGACGCTG AAAAGTTTGC AGAAGTTTGT CCATGCCCTT GTAATGGTTT TGGCTGGGGA GTTATTTGGG
GGATGATATC ATTTGCATTT CTTTGCGGAT CTTTGTACCT TGGCTTGGTC ATATTATCAG GTAAATATGA AGAGTTTAAT
TTAGTATGCT TTCAGTGTAA AATTTTCTGT ATGATCAATC TACTAGAAAT TACTCAGATA TGA

>Vigan.04G007800.01
MPNWELRNCC DHDQKVFIGC VAGFTVVILV LWRTFVLTPF KLITVFLHEA SHAIACWLTC GKVEGIQVHA NEGGVTQTRG
GIYWVILPAG YLGSSFWGMA LILASTNLLT AKIAAGCFIA ALIVVLFLAK NWTLRGLCIG FIVFIAVIWV LQEKTTVHVL
RYVILFIGVM NSLFSVYDIY DDLISRRVNS SDAEKFAEVC PCPCNGFGWG VIWGMISFAF LCGSLYLGLV ILSGKYEEFN
LVCFQCKIFC MINLLEITQI *