VIGGS:GBrowse

Vigan.04G011900.01

Basic Information:

Name:	Vigan.04G011900.01 Multiple alignment Variant Information
Position:	Chr04:985855..989699 (- strand)
Length:	3845

Functional Information:

Description:	Similar to uncharacterized LOC101208221. [XP_004166187.1, Cucumis sativus]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.76,1.95,5.51,12.20,6.15,9.59,7.76,4.64
Arabidopsis thaliana homolog:	AT5G38060.1

Automatic updates:

Name:	NM_001249392 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100526944 (LOC100526944), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:985855..986099 (- strand)
Length:	245
Type:	three_prime_UTR

Position:	Chr04:986100..986254 (- strand)
Length:	155
Type:	CDS

Position:	Chr04:989399..989648 (- strand)
Length:	250
Type:	CDS

Position:	Chr04:989649..989699 (- strand)
Length:	51
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G011900.01
GACAGTGTTC AGAGAATCGA AACCTTCTTA TCTGTGTTTT GTGATTGGTT CATGGCTCTT TCCTTTTCAC AACACCCTCT
TCTCCAGGGA AACAAAACAC CTTTTACTCT GCAATTTCAA TGCATGACTT CATCAAAGCA CAACAACGCA AACATACTCA
CGTACCCATC TATTCGGTGT TGCTCAAGTT TGAACCAAAA AAGCAGCATC AACCTCAGAA CTTGCAAGAA CTGCAAAACC
CAATTCGACC CTTCTCTCAA TCACCCTCTT GCTTGTCGAT TTCACACTGC CCATTTTGGA GGAGAAACTA AGAGAAAGTT
TGAGAGTGTG TATGAAGGGG GCACCATGAA TACTCCTGAC TCTGGCAAAG TTTTGCAGTA TTGGCATTGC TGTGGTTCTG
AAGATCCATT TGATCCTGGT TGCACATCTT CTCCTCATGC CTCATATGAT GATTGATGCA CATGTCATTC ATCATCATCC
ATGAATCAAA TTCACTTCTT CCATTTATTT TTCTTGTAAC TATATATGGT TTCTAAACTC ATGTGTAATA TTTTAGATTC
CTTGAATAAT TTTAGAAAAT TTAAATGTTG CCCAGATGCA AAACAAAGTG TGGACTACAC ATCTAATCTG GTACCCAAGG
TGTATAATTT ATGGATAAAG TTGAGCATGG GAAGAGTTTT TGTAAAAATT AACTTAACAA A

[show][hide][copy]CDS

>Vigan.04G011900.01
ATGGCTCTTT CCTTTTCACA ACACCCTCTT CTCCAGGGAA ACAAAACACC TTTTACTCTG CAATTTCAAT GCATGACTTC
ATCAAAGCAC AACAACGCAA ACATACTCAC GTACCCATCT ATTCGGTGTT GCTCAAGTTT GAACCAAAAA AGCAGCATCA
ACCTCAGAAC TTGCAAGAAC TGCAAAACCC AATTCGACCC TTCTCTCAAT CACCCTCTTG CTTGTCGATT TCACACTGCC
CATTTTGGAG GAGAAACTAA GAGAAAGTTT GAGAGTGTGT ATGAAGGGGG CACCATGAAT ACTCCTGACT CTGGCAAAGT
TTTGCAGTAT TGGCATTGCT GTGGTTCTGA AGATCCATTT GATCCTGGTT GCACATCTTC TCCTCATGCC TCATATGATG
ATTGA

[show][hide][copy]PROTEIN

>Vigan.04G011900.01
MALSFSQHPL LQGNKTPFTL QFQCMTSSKH NNANILTYPS IRCCSSLNQK SSINLRTCKN CKTQFDPSLN HPLACRFHTA
HFGGETKRKF ESVYEGGTMN TPDSGKVLQY WHCCGSEDPF DPGCTSSPHA SYDD*