VIGGS:GBrowse

Vigan.04G012200.01

Basic Information:

Name:	Vigan.04G012200.01 Multiple alignment Variant Information
Position:	Chr04:1004274..1005345 (+ strand)
Length:	1072

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JDN3, Glycine max]
GO:	Biological Process: metal ion transport (GO:0030001)
GO:	Molecular Function: metal ion binding (GO:0046872)
InterPro:	Heavy metal-associated domain, HMA (IPR006121)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.13,14.45,3.67,0.66,3.32,1.12,3.65

Automatic updates:

Name:	NM_001249244 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heavy-metal-associated domain-containing protein (LOC100306004), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:1004274..1004499 (+ strand)
Length:	226
Type:	five_prime_UTR

Position:	Chr04:1004500..1004568 (+ strand)
Length:	69
Type:	CDS

Position:	Chr04:1004685..1004760 (+ strand)
Length:	76
Type:	CDS

Position:	Chr04:1004966..1005261 (+ strand)
Length:	296
Type:	CDS

Position:	Chr04:1005262..1005345 (+ strand)
Length:	84
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G012200.01
CACTAATCTA GCTTTATGGG CACCTATCTC CACTACATTT TTTTCGTTTA TTATATTAAT TTAATGTTCT AGACACTGCT
TTCGAAGTTC AACCTTCTCT CCATAGCTGT GAATCTTTAG CTTCCTATAT AAACACCACA CCCTCATCTT TGATTTGTGT
CTGTCTTCTC TCTCACTGAT CTTATTCACT CTCACCATCT TTGCCCTTTG CTTTTTGGAA AGGAAAATGG GTGCACTTAC
CTACATCATC TCCAACTTTT GCACAGTTCC AACCCCAAAG ACCAAAACAA TGCAGACAGT CGAGATCAAA GTCAAAATGG
ACTGTGATGG CTGTGAACGA AAAGTCAGAA ATGCAGTAGC CACAATGAAA GGAGTAAAAT CTGTGGAGAT AAACCGAAAG
CAAAGCAGGG TGACTGTGAA CGGTTGTGTT GATCCAAACA AGGTGTTGAA TAGGGTAAAG AGAACTGGGA AGAAAAGAGC
TGAATTTTGG CCCTATGTTC CACAGCATGT GGTGACATAT CCTCATGCCT CCGGCGTCTA TGACAAAAGG GCACCCTCCG
GCTATGTTCG AAACACGCAG ACATTTACAC CTTCTGCTGC TGAGACAGAA GAGAAATTCA TGTCCCTTTT CAGTGAAGAC
AACGTAAATT CATGTTCCAT CATGTAAAAT GTATAACGTA AGCAACAATA TCTGACAGAA TGGAGAAACT ATATTAGATG
ATGTTATGAG ATACAACTTG GATCAATCTT T

[show][hide][copy]CDS

>Vigan.04G012200.01
ATGGGTGCAC TTACCTACAT CATCTCCAAC TTTTGCACAG TTCCAACCCC AAAGACCAAA ACAATGCAGA CAGTCGAGAT
CAAAGTCAAA ATGGACTGTG ATGGCTGTGA ACGAAAAGTC AGAAATGCAG TAGCCACAAT GAAAGGAGTA AAATCTGTGG
AGATAAACCG AAAGCAAAGC AGGGTGACTG TGAACGGTTG TGTTGATCCA AACAAGGTGT TGAATAGGGT AAAGAGAACT
GGGAAGAAAA GAGCTGAATT TTGGCCCTAT GTTCCACAGC ATGTGGTGAC ATATCCTCAT GCCTCCGGCG TCTATGACAA
AAGGGCACCC TCCGGCTATG TTCGAAACAC GCAGACATTT ACACCTTCTG CTGCTGAGAC AGAAGAGAAA TTCATGTCCC
TTTTCAGTGA AGACAACGTA AATTCATGTT CCATCATGTA A

[show][hide][copy]PROTEIN

>Vigan.04G012200.01
MGALTYIISN FCTVPTPKTK TMQTVEIKVK MDCDGCERKV RNAVATMKGV KSVEINRKQS RVTVNGCVDP NKVLNRVKRT
GKKRAEFWPY VPQHVVTYPH ASGVYDKRAP SGYVRNTQTF TPSAAETEEK FMSLFSEDNV NSCSIM*