GBrowse Details

Vigan.04G017700.01

Basic Information:
Name: Vigan.04G017700.01
Multiple alignment
Variant Information
Position: Chr04:1524299..1528153 (- strand)
Length: 3855
Functional Information:
Description: Similar to BZIP transcription factor bZIP69. [Q0GPF3, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Basic-leucine zipper domain (IPR004827)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.15,4.26,41.56,0.06,0.00,0.07,11.23
Arabidopsis thaliana homolog: AT3G17609.2
Automatic updates:
Name: NM_001250277 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bZIP transcription factor bZIP69 (BZIP69), mRNA.
PubMed ID: 18365246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:1524299..1524591 (- strand)
Length: 293
Type: three_prime_UTR
Position: Chr04:1524592..1524663 (- strand)
Length: 72
Type: CDS
Position: Chr04:1525048..1525204 (- strand)
Length: 157
Type: CDS
Position: Chr04:1526826..1527009 (- strand)
Length: 184
Type: CDS
Position: Chr04:1527816..1527975 (- strand)
Length: 160
Type: CDS
Position: Chr04:1527976..1528153 (- strand)
Length: 178
Type: five_prime_UTR


>Vigan.04G017700.01
CAAACTTTCT GGTCCCATCC CTTGTATGTT TCATCGTCAA TGGTTTAGGA TGAGATGGTT CCATCCAACA CTTAAAACAC
ATGGTCCCAT CTTTCACACT AACTAGGACT ACACACAAAC ACTTTTTCCC TTTGAGAAGA AAAAATAGCT ACAGCCTTCA
TAGCAAAGAG AGAAAAAGAT GGCTCTTCCA AGACCAAGCA GTGAAGAGAA AGCCCTTTCT CAGCTCAAAG AAGGAACAGC
ATCATCATCA GCAGCAGCAC CACCTTCATC ATCTTCTTCA TGGAATAGGC TTCACACTTT CTCTCCTTTG AATCTACACA
ACAAGACTAG CAAAATTGAA GACAGTGATG AAGATATGTT CACAGTTCCA GATGTCGAGA CCACACCCAT TAATGTTCAT
TCTCATCCAA ACAGTAACCT TAAACAATCT AACGTGACAG AACCTCAGTT TCAAACTGGT TTCCCTGGAA AGCGTCGCAG
GGGAAGAAAC CCTGCAGATA AGGAACATAG ACGTCTCAAG AGGTTGTTGA GAAATAGAGT TTCTGCTCAA CAAGCTCGAG
AAAGAAAGAA GGTTTATGTG AATGATTTGG AAGCAAGAGC CAAAGAGTTG CAAGATAAAA ATGCTATCTT AGAAGAACGT
ATCTCTACTT TGATAAATGA GAACACCATG CTTAGAAAGG TTCTTATGAA TGCCAGGCCA AAAGTTGATG ATAGTAATGA
ACAAAAGCAA GAGCACTTAA GTAAGAGCTA ACAAGGTTAA ACCTTCAAAA AAATTATTTA TAATTTATTC TATAATGTAA
ATTTACAAAT TTATGACTAT TTTCTTTCTT TTATACTTTT ATCTAAGACG TTCTCCACCT CCACATCAAG GTTTTTTGTT
CGGCATTCTT TGATGTAGTG AAGTTGGAAA AAATTTAAAA TTAATGCTTA TTGTATAGTA GTTTCAATGT ATCTTAAGAA
AATATTTAGT CCGTGCAGAT TGAATTTAAA ATTTATTAGA TTTTATGATA CTCTAATGAG ATATATTGTC ATATTCTAGA
GTTA

>Vigan.04G017700.01
ATGGCTCTTC CAAGACCAAG CAGTGAAGAG AAAGCCCTTT CTCAGCTCAA AGAAGGAACA GCATCATCAT CAGCAGCAGC
ACCACCTTCA TCATCTTCTT CATGGAATAG GCTTCACACT TTCTCTCCTT TGAATCTACA CAACAAGACT AGCAAAATTG
AAGACAGTGA TGAAGATATG TTCACAGTTC CAGATGTCGA GACCACACCC ATTAATGTTC ATTCTCATCC AAACAGTAAC
CTTAAACAAT CTAACGTGAC AGAACCTCAG TTTCAAACTG GTTTCCCTGG AAAGCGTCGC AGGGGAAGAA ACCCTGCAGA
TAAGGAACAT AGACGTCTCA AGAGGTTGTT GAGAAATAGA GTTTCTGCTC AACAAGCTCG AGAAAGAAAG AAGGTTTATG
TGAATGATTT GGAAGCAAGA GCCAAAGAGT TGCAAGATAA AAATGCTATC TTAGAAGAAC GTATCTCTAC TTTGATAAAT
GAGAACACCA TGCTTAGAAA GGTTCTTATG AATGCCAGGC CAAAAGTTGA TGATAGTAAT GAACAAAAGC AAGAGCACTT
AAGTAAGAGC TAA

>Vigan.04G017700.01
MALPRPSSEE KALSQLKEGT ASSSAAAPPS SSSSWNRLHT FSPLNLHNKT SKIEDSDEDM FTVPDVETTP INVHSHPNSN
LKQSNVTEPQ FQTGFPGKRR RGRNPADKEH RRLKRLLRNR VSAQQARERK KVYVNDLEAR AKELQDKNAI LEERISTLIN
ENTMLRKVLM NARPKVDDSN EQKQEHLSKS *