VIGGS:GBrowse

Vigan.04G018200.01

Basic Information:

Name:	Vigan.04G018200.01 Multiple alignment Variant Information
Position:	Chr04:1575602..1579906 (+ strand)
Length:	4305

Functional Information:

Description:	Similar to Uncharacterized protein. [I1N523, Glycine max]
GO:	Biological Process: cation transport (GO:0006812)
	Biological Process: transmembrane transport (GO:0055085)
	Cellular Component: integral to membrane (GO:0016021)
	Molecular Function: cation transmembrane transporter activity (GO:0008324)
InterPro:	Cation efflux protein (IPR002524)
	Cation efflux protein transmembrane domain (IPR027469)
	Cation efflux protein cytoplasmic domain (IPR027470)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:3.74,9.52,36.88,89.81,11.54,52.64,18.72,50.71
Arabidopsis thaliana homolog:	AT2G39450.1

Automatic updates:

Name:	NM_001255719 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max metal tolerance protein 5-like (LOC100791229), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:1575602..1575852 (+ strand)
Length:	251
Type:	five_prime_UTR

Position:	Chr04:1575853..1576024 (+ strand)
Length:	172
Type:	CDS

Position:	Chr04:1577177..1577286 (+ strand)
Length:	110
Type:	CDS

Position:	Chr04:1577377..1577622 (+ strand)
Length:	246
Type:	CDS

Position:	Chr04:1577814..1577894 (+ strand)
Length:	81
Type:	CDS

Position:	Chr04:1578036..1578269 (+ strand)
Length:	234
Type:	CDS

Position:	Chr04:1579144..1579491 (+ strand)
Length:	348
Type:	CDS

Position:	Chr04:1579492..1579906 (+ strand)
Length:	415
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G018200.01
AATGAAACCG CAACGCGTGT CGGAAAGTGC CGAAATATGA CCTGCGTGGT ACACGCGCCT ATCGGATCTC ATGTCACAGA
CTCTCTTGTT TATTTATCAT TTTTTTTTCT CATGAATCCC ACTTTACCGG TTCGAAAATC TGCTACGGCT GTTGTTATAA
CAAGCACCAA CCACGACGAC CCTGCTTGCA TTCTTTGCTC CTTCCGGGCT GTCCAAAACG ACGGCGTTTA AGATTCTCAG
GCGACCGGGA AATGGTGGAG ACGGCGGAGC TTCACGGCGA GGAGCAGCGC TCGTTGCTCT CAGATTCGAA CAATGGGGAC
CGGTCCTGGC GGTTGAACTT CGAGGGGTTT CAGATATCTT CGGAGCACAC GGAGAAGCAA GTGAAACCCT CTCGCGGACT
CTATGACTGT TATGGCGTTC TAGGTCAAGA GGATAATATT GCGGAGTACT ACCAGCAGCA AGTTGAAGTG CTTGAGGGCT
TTACTGAAAT GGATGCCCTA GCAGAGCGTG GTTTTATTCC TGGAATGTCG AAGGAGGAGC GAGACAAGTT AGCAAGAAGT
GAGACGTTTG CCATCAGATT GTCAAATGTA GCAAACATGG TTCTTTTTGT CGCCAAAGTT TATGCATCAA TACGAAGTGG
TTCCCTAGCC ATCATTGCAT CGACTTTAGA CTCGCTTCTT GATCTTCTTT CTGGATTTAT CCTCTGGTTC ACTGCATTTT
CCATGCAGAC ACCAAACCCG TATCAGTATC CTATAGGAAA GAAACGGATG CAACCATTGG GAATTCTTGT TTTTGCCTCT
GTCATGGCTA CACTGGGACT GCAAATCATC TTGGAGTCTA TCCGCACATT AATATATACT GACAATGCAT TCAACTTGAC
CAAGGAACAA GAGCGATGGG TTGTGGGGAT TATGCTTTCG GTGACTTTGG TGAAATTCTT ACTGATGATT TATTGCCGCA
CTTTTACTAA TGAGATCATT AAAGCCTATG CCCAGGATCA TTTCTTTGAT GTGATCACTA ATGTCATTGG TCTTATTGCT
GCACTTTTGG CAAATTATGT TGATGATTGG ATGGATCCTG TTGGTGCTAT CATTCTGGCG TTGTACACCA TTCGTACATG
GTCAATGACA GTGTTGGAAA ATGTGAATTC CCTGGTTGGA AAATCAGCTG CACCTGAGTA TCTTCAGAAA CTCACGTACC
TATGCTGGAA CCACCACAAG GCTGTGAGGC ACATTGATAC AGTTCGAGCA TACACATTCG GGTCTCACTA CTTTGTTGAA
GTTGATATTG TCCTGCCAGC AGATATGCAG TTGCAAGAGG CCCATGATAT CGGGGAATCA TTGCAAGAGA AGCTTGAGCT
TTTACCCGAG ATCGAGCGTG CTTTTGTTCA TCTTGATTAT GAGTACAGTC ACAAACCTGA GCATGCACAA TCTCACTCTT
AGCAGCAGTA AGGAAAACCA ATGTCCTTGT TTTCATTTAC CCTTTCATCT CCTGTCAGTT GTAAATGTGA ACCGTATATG
GTAGTTCAGA ATCTGAACTT CTGAGCAAGT CACTAAGAAG TTGTTAGCTA TACCAGCAGC TATCAGTCTA CTTTCTGGCA
GACCTGACAA TGTTCCCAAA TGTATATCAA GATAGTCTTT TCAGTTAAGA CCTTCCTTCC AAGTTCCATT TAGGGGAAAC
AGAATCGTTA TATTCTTGTA GAGTGCACTC TTTCTACCTT AATTAAGCTT TAAGGGGTTG TGTGCTGGTC TTGGTTATTT
CTAACATCAC CAAATACGAT AATATATACA TAACATGCTA AGTTCTTCTT TTACAAGACT ATTTTTTACT TGTAGACCTT
ATTGTCTTAT TTATCTT

[show][hide][copy]CDS

>Vigan.04G018200.01
ATGGTGGAGA CGGCGGAGCT TCACGGCGAG GAGCAGCGCT CGTTGCTCTC AGATTCGAAC AATGGGGACC GGTCCTGGCG
GTTGAACTTC GAGGGGTTTC AGATATCTTC GGAGCACACG GAGAAGCAAG TGAAACCCTC TCGCGGACTC TATGACTGTT
ATGGCGTTCT AGGTCAAGAG GATAATATTG CGGAGTACTA CCAGCAGCAA GTTGAAGTGC TTGAGGGCTT TACTGAAATG
GATGCCCTAG CAGAGCGTGG TTTTATTCCT GGAATGTCGA AGGAGGAGCG AGACAAGTTA GCAAGAAGTG AGACGTTTGC
CATCAGATTG TCAAATGTAG CAAACATGGT TCTTTTTGTC GCCAAAGTTT ATGCATCAAT ACGAAGTGGT TCCCTAGCCA
TCATTGCATC GACTTTAGAC TCGCTTCTTG ATCTTCTTTC TGGATTTATC CTCTGGTTCA CTGCATTTTC CATGCAGACA
CCAAACCCGT ATCAGTATCC TATAGGAAAG AAACGGATGC AACCATTGGG AATTCTTGTT TTTGCCTCTG TCATGGCTAC
ACTGGGACTG CAAATCATCT TGGAGTCTAT CCGCACATTA ATATATACTG ACAATGCATT CAACTTGACC AAGGAACAAG
AGCGATGGGT TGTGGGGATT ATGCTTTCGG TGACTTTGGT GAAATTCTTA CTGATGATTT ATTGCCGCAC TTTTACTAAT
GAGATCATTA AAGCCTATGC CCAGGATCAT TTCTTTGATG TGATCACTAA TGTCATTGGT CTTATTGCTG CACTTTTGGC
AAATTATGTT GATGATTGGA TGGATCCTGT TGGTGCTATC ATTCTGGCGT TGTACACCAT TCGTACATGG TCAATGACAG
TGTTGGAAAA TGTGAATTCC CTGGTTGGAA AATCAGCTGC ACCTGAGTAT CTTCAGAAAC TCACGTACCT ATGCTGGAAC
CACCACAAGG CTGTGAGGCA CATTGATACA GTTCGAGCAT ACACATTCGG GTCTCACTAC TTTGTTGAAG TTGATATTGT
CCTGCCAGCA GATATGCAGT TGCAAGAGGC CCATGATATC GGGGAATCAT TGCAAGAGAA GCTTGAGCTT TTACCCGAGA
TCGAGCGTGC TTTTGTTCAT CTTGATTATG AGTACAGTCA CAAACCTGAG CATGCACAAT CTCACTCTTA G

[show][hide][copy]PROTEIN

>Vigan.04G018200.01
MVETAELHGE EQRSLLSDSN NGDRSWRLNF EGFQISSEHT EKQVKPSRGL YDCYGVLGQE DNIAEYYQQQ VEVLEGFTEM
DALAERGFIP GMSKEERDKL ARSETFAIRL SNVANMVLFV AKVYASIRSG SLAIIASTLD SLLDLLSGFI LWFTAFSMQT
PNPYQYPIGK KRMQPLGILV FASVMATLGL QIILESIRTL IYTDNAFNLT KEQERWVVGI MLSVTLVKFL LMIYCRTFTN
EIIKAYAQDH FFDVITNVIG LIAALLANYV DDWMDPVGAI ILALYTIRTW SMTVLENVNS LVGKSAAPEY LQKLTYLCWN
HHKAVRHIDT VRAYTFGSHY FVEVDIVLPA DMQLQEAHDI GESLQEKLEL LPEIERAFVH LDYEYSHKPE HAQSHS*