GBrowse Details

Vigan.04G024000.01

Basic Information:
Name: Vigan.04G024000.01
Multiple alignment
Variant Information
Position: Chr04:2094565..2096369 (- strand)
Length: 1805
Functional Information:
Description: Similar to Allene oxide cyclase 5. [F6KBT5, Glycine max]
GO: Cellular Component: chloroplast (GO:0009507)
Molecular Function: isomerase activity (GO:0016853)
InterPro: Allene oxide cyclase (IPR009410)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.46,1.43,78.28,18.08,38.14,90.23,37.46,91.50
Automatic updates:
Name: NM_001253104 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max allene oxide cyclase 4, chloroplastic-like (AOC6), mRNA.
PubMed ID: 21626009 NCBI(pubmed)
Status: Known Variant
Name: NM_001255797 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max allene oxide cyclase 5 (AOC5), mRNA.
PubMed ID: 21626009 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:2094565..2094801 (- strand)
Length: 237
Type: three_prime_UTR
Position: Chr04:2094802..2095203 (- strand)
Length: 402
Type: CDS
Position: Chr04:2095573..2095694 (- strand)
Length: 122
Type: CDS
Position: Chr04:2095809..2096055 (- strand)
Length: 247
Type: CDS
Position: Chr04:2096056..2096369 (- strand)
Length: 314
Type: five_prime_UTR


>Vigan.04G024000.01
TCCTTCCAAA AACATATGCC ACGCCGATTC TCAACATAAG AAAATGATGC ACTATTCATG AGACCGTCCA CTATCCTTTG
TAGCCATTAT TGTACATTTG ACCCTCTCAA ACGTGTCTTT CTTTCACATT CTCACCGTAA GATTCACACC TTCCTTCCAC
CGTCCACCTG TTAACCCAGT AATCTCCCTT TGTAGCCACC ACTTTGCACT ATATATATAT ATATAAACCA CCTTTACCTT
CTTCACATCA CACACTCCAT AGCCTTCTCT TTTCTTCTCA TCTGAAAACA CCCTCAACAC ACACACTTTT AACAATGGCA
GCCTTCTCAA GCCATGCCAT CAAAACCATC CCTTCATTTT CCTTTCAGAA ATCTGTCACC ACCAAACCAG CTTCGTTGTT
CCTCACACCC TCAAATATCA AACCTTCATC ACCCTTCGTC TCATCAAACC ATTCTCTTGC CAAAAGTCTC AAGCTTAACT
CCACTTTGCC ACACTCTTCT TTCACTTCAG TTCCCAAGAA ATCTTTCACT TGCAGAAGCC AGACTCAGCC TGTTGACTCT
GACAAAGTCC AAGAACTGAG TGTGTACGAG ATCAACGAGC GAGACCGTGG CAGCCCTGTT TACCTTAGAT TGAGCAATAA
AAGTGTGAAT TCCCTTGGTG ATTTAGTCCC CTTCAGCAAC AAGTTGTACA CTGGAGATTT GCAAAAGCGC ATTGGCATAA
CATCTGGTAT TTGCATTTTG ATCCAAAACA AAGCTGAAAA GAAAGGGGAC AGATACGAAG CAATCTTCAG CTTCTACTTT
GGAGACTATG GTCACATAGC AGTGCAGGGA CCATACCTTA CCTACGAGGA CTCATATCTG GCTGTGACTG GTGGATCTGG
AATTTTTGAG GGAGTTAAGG GTCAAGTGAA GCTGCATCAA ATCGTGTATC CTTTCAAGAT TTTATACACA TTTTACCTAA
AGGGTATTAA GGATTTGCCT CAAGAGCTTC TTGTGAAGAC TGTTGAACCC ATTCCTTCTG TTGAAGCTTC CCCTGCTGCT
AAAGCCCTTG AACCCAATGC CACCATTGCT GGTTTCACAG ATTAAAGTTC ATCTTTTTAT TACTTTTTTT TTTGTTGGCC
CTTTGTAGTT TGATATAAGT TTCTTAATAA CAAGTGGGGG TGTTTGATGC TTTTCTTTTT GTAGTAGTGG AGTTTCCATT
TGATGAAAAA CTTGACATTG TTCCACTGTT TGAACAAATA TCATGTGTAA CAAAAACGAG TGTGTTTGCC ACCATTGGTG
TTGGACTATT TATATGTTTT AGTTACTGTT TTTTATGCCT TT

>Vigan.04G024000.01
ATGGCAGCCT TCTCAAGCCA TGCCATCAAA ACCATCCCTT CATTTTCCTT TCAGAAATCT GTCACCACCA AACCAGCTTC
GTTGTTCCTC ACACCCTCAA ATATCAAACC TTCATCACCC TTCGTCTCAT CAAACCATTC TCTTGCCAAA AGTCTCAAGC
TTAACTCCAC TTTGCCACAC TCTTCTTTCA CTTCAGTTCC CAAGAAATCT TTCACTTGCA GAAGCCAGAC TCAGCCTGTT
GACTCTGACA AAGTCCAAGA ACTGAGTGTG TACGAGATCA ACGAGCGAGA CCGTGGCAGC CCTGTTTACC TTAGATTGAG
CAATAAAAGT GTGAATTCCC TTGGTGATTT AGTCCCCTTC AGCAACAAGT TGTACACTGG AGATTTGCAA AAGCGCATTG
GCATAACATC TGGTATTTGC ATTTTGATCC AAAACAAAGC TGAAAAGAAA GGGGACAGAT ACGAAGCAAT CTTCAGCTTC
TACTTTGGAG ACTATGGTCA CATAGCAGTG CAGGGACCAT ACCTTACCTA CGAGGACTCA TATCTGGCTG TGACTGGTGG
ATCTGGAATT TTTGAGGGAG TTAAGGGTCA AGTGAAGCTG CATCAAATCG TGTATCCTTT CAAGATTTTA TACACATTTT
ACCTAAAGGG TATTAAGGAT TTGCCTCAAG AGCTTCTTGT GAAGACTGTT GAACCCATTC CTTCTGTTGA AGCTTCCCCT
GCTGCTAAAG CCCTTGAACC CAATGCCACC ATTGCTGGTT TCACAGATTA A

>Vigan.04G024000.01
MAAFSSHAIK TIPSFSFQKS VTTKPASLFL TPSNIKPSSP FVSSNHSLAK SLKLNSTLPH SSFTSVPKKS FTCRSQTQPV
DSDKVQELSV YEINERDRGS PVYLRLSNKS VNSLGDLVPF SNKLYTGDLQ KRIGITSGIC ILIQNKAEKK GDRYEAIFSF
YFGDYGHIAV QGPYLTYEDS YLAVTGGSGI FEGVKGQVKL HQIVYPFKIL YTFYLKGIKD LPQELLVKTV EPIPSVEASP
AAKALEPNAT IAGFTD*