GBrowse Details

Vigan.04G028500.01

Basic Information:
Name: Vigan.04G028500.01
Multiple alignment
Variant Information
Position: Chr04:2441825..2444336 (+ strand)
Length: 2512
Functional Information:
Description: Similar to Zinc finger protein CONSTANS-LIKE 2. [B9MSS7, Glycine max]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, B-box (IPR000315)
CCT domain (IPR010402)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.70,13.76,25.77,248.57,0.06,3.28,0.28,40.19
Arabidopsis thaliana homolog: AT3G02380.1
Automatic updates:
Name: NM_001248899 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CONSTANS-like 2a (COL2a), mRNA.
PubMed ID: 26508522 NCBI(pubmed)
Status: Known Variant
Name: NM_001248914 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger protein CONSTANS-LIKE 2 (COL2B), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:2441825..2442087 (+ strand)
Length: 263
Type: five_prime_UTR
Position: Chr04:2442088..2442801 (+ strand)
Length: 714
Type: CDS
Position: Chr04:2443823..2444182 (+ strand)
Length: 360
Type: CDS
Position: Chr04:2444183..2444336 (+ strand)
Length: 154
Type: three_prime_UTR


>Vigan.04G028500.01
AAACCCTATA ATGGGCCCAC CTTAAAGCAC AGCCACCCAC AAGATAGATA ATGTCCGAAC TTTTTGACAC CACATCTTTC
TGACACGTGT CACACATAGA TTCTCCCACT CTCTCAAAGC CACCAAAAAC AGCAAAACCC CGTTCACTGC TTACACACAA
ACACAACACA ACTTCGTAAG TTCTTAGTTT CTTCCTTTTC TTTTTCTAGT TCTCACCGAA ACGGTATACT AAACTCACTC
TGACAAAACT ACTAACTCCC TAAATGTTGG AGGGAGAAGC TGCTGGCACG TGGGCACGCG CGTGCGACAC GTGCCGCTCC
GCAGCCTCCA CCGTCTTCTG CCGCGCCCAC AACGCCTACC TCTGCGCCTC CTGCGATGGC CGCGTGCACC ACGCGTCCTC
CTCCTCTTGG CACGAGCGTG TGTGGGTCTG CGAGGCCTGC GAACGGGCCC CCGCGGCGTT CCTCTGCAAG GCCGACGCCG
CCTCCCTCTG CTCCTCATGC GACGCCGACA TCCACTCCGC GAACCCTCTC GCAAGCCGCC ACCACCGCGT CCCCATCCTC
CCCATCGCTG CCGGCCACCA CTCTCACGTC GAAATCGACG TCGCCGACGA CGACGATGGT GCTGACGTGG ATGACGAAGA
CGAAACCGCT TCCTGGCTCT TGCTCAACCC TGTCAAAACT GGCACTGTCC CTAATAGCAA CAATAATGGG TTCTTGTACA
GTGGTGAGGT TGACGAGTAT TTGGACCTTG TTGATAACTG TAACTCTTGT GGTGACAACA ACCACTTCGC TGCAACTACC
ACTACTGCCA CTACTGCTGA TCATTACACT CAGCACCATC ATTTTGACGG TGTTTCTCAG AAGAGTTATG CCGGGGACAG
CGTGGTTCCG GTTCAGCAGC ACCACCATTT TCAGCTTGGC TTGGAGTTCG AGAATTCTAA AGCTGCCTTC AGTTACAATG
GTTCTATTAC TCAAAGTATT TCAGTTTCAT CAATGGATAT TGGTGTTGTA CCTGAATCAC CGATGAGGGA TGTCTCAATT
TCCCATACAA GACCCCCCAA AGGGACGATT GACCTATTTT CTGGACCTCC CATTCAGATG CCTTCCCACT TTTCTCCAAT
GGACAGGGAG GCCAGAGTCC TAAGGTACAG AGAGAAAAAG AAGACAAGAA AATTTGAGAA AACTATCAGG TATGCCTCAA
GGAAGGCCTA TGCAGAGACC AGACCCCGAA TAAAGGGTCG TTTTGCCAAG AGAACAGATG TGGAAGCTGA AGTGGATCAG
ATGTTCTCCA CAACACTAAT TACAGAAGTT GGATATGGAA TTGTTCCCTC TTTCTGAATA TGCTGTGTTG AACAAAAATG
ACCACAAGAC AGAGAAGAAG CCAGAGGATC TTGATCAATA GAAATGGCAA CCACTTATGT ACTAAGTTGT TTTGTTGATA
ATGTATTTTT TATGTAATCT AATTACTCCA AGTTGCACTA ATCGGATGCT T

>Vigan.04G028500.01
ATGTTGGAGG GAGAAGCTGC TGGCACGTGG GCACGCGCGT GCGACACGTG CCGCTCCGCA GCCTCCACCG TCTTCTGCCG
CGCCCACAAC GCCTACCTCT GCGCCTCCTG CGATGGCCGC GTGCACCACG CGTCCTCCTC CTCTTGGCAC GAGCGTGTGT
GGGTCTGCGA GGCCTGCGAA CGGGCCCCCG CGGCGTTCCT CTGCAAGGCC GACGCCGCCT CCCTCTGCTC CTCATGCGAC
GCCGACATCC ACTCCGCGAA CCCTCTCGCA AGCCGCCACC ACCGCGTCCC CATCCTCCCC ATCGCTGCCG GCCACCACTC
TCACGTCGAA ATCGACGTCG CCGACGACGA CGATGGTGCT GACGTGGATG ACGAAGACGA AACCGCTTCC TGGCTCTTGC
TCAACCCTGT CAAAACTGGC ACTGTCCCTA ATAGCAACAA TAATGGGTTC TTGTACAGTG GTGAGGTTGA CGAGTATTTG
GACCTTGTTG ATAACTGTAA CTCTTGTGGT GACAACAACC ACTTCGCTGC AACTACCACT ACTGCCACTA CTGCTGATCA
TTACACTCAG CACCATCATT TTGACGGTGT TTCTCAGAAG AGTTATGCCG GGGACAGCGT GGTTCCGGTT CAGCAGCACC
ACCATTTTCA GCTTGGCTTG GAGTTCGAGA ATTCTAAAGC TGCCTTCAGT TACAATGGTT CTATTACTCA AAGTATTTCA
GTTTCATCAA TGGATATTGG TGTTGTACCT GAATCACCGA TGAGGGATGT CTCAATTTCC CATACAAGAC CCCCCAAAGG
GACGATTGAC CTATTTTCTG GACCTCCCAT TCAGATGCCT TCCCACTTTT CTCCAATGGA CAGGGAGGCC AGAGTCCTAA
GGTACAGAGA GAAAAAGAAG ACAAGAAAAT TTGAGAAAAC TATCAGGTAT GCCTCAAGGA AGGCCTATGC AGAGACCAGA
CCCCGAATAA AGGGTCGTTT TGCCAAGAGA ACAGATGTGG AAGCTGAAGT GGATCAGATG TTCTCCACAA CACTAATTAC
AGAAGTTGGA TATGGAATTG TTCCCTCTTT CTGA

>Vigan.04G028500.01
MLEGEAAGTW ARACDTCRSA ASTVFCRAHN AYLCASCDGR VHHASSSSWH ERVWVCEACE RAPAAFLCKA DAASLCSSCD
ADIHSANPLA SRHHRVPILP IAAGHHSHVE IDVADDDDGA DVDDEDETAS WLLLNPVKTG TVPNSNNNGF LYSGEVDEYL
DLVDNCNSCG DNNHFAATTT TATTADHYTQ HHHFDGVSQK SYAGDSVVPV QQHHHFQLGL EFENSKAAFS YNGSITQSIS
VSSMDIGVVP ESPMRDVSIS HTRPPKGTID LFSGPPIQMP SHFSPMDREA RVLRYREKKK TRKFEKTIRY ASRKAYAETR
PRIKGRFAKR TDVEAEVDQM FSTTLITEVG YGIVPSF*