GBrowse Details

Vigan.04G035000.01

Basic Information:
Name: Vigan.04G035000.01
Multiple alignment
Variant Information
Position: Chr04:3006251..3012296 (+ strand)
Length: 6046
Functional Information:
Description: Similar to Phytochelatin synthetase-like protein. [Q69F97, Phaseolus vulgaris]
GO: Biological Process: cellulose microfibril organization (GO:0010215)
Biological Process: cell growth (GO:0016049)
Cellular Component: anchored to membrane (GO:0031225)
InterPro: COBRA, plant (IPR006918)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.39,1.38,1.64,0.90,7.34,2.51,18.65
Arabidopsis thaliana homolog: AT3G02210.1, AT3G29810.1, AT5G15630.1, AT5G60920.1
Automatic updates:
Name: NM_001255146 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max COBRA-like protein 4-like (LOC100783410), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255848 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max COBRA-like protein 4-like (LOC100784352), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:3006251..3006377 (+ strand)
Length: 127
Type: five_prime_UTR
Position: Chr04:3006378..3006429 (+ strand)
Length: 52
Type: CDS
Position: Chr04:3006522..3006601 (+ strand)
Length: 80
Type: CDS
Position: Chr04:3006844..3007300 (+ strand)
Length: 457
Type: CDS
Position: Chr04:3007389..3007536 (+ strand)
Length: 148
Type: CDS
Position: Chr04:3007622..3007899 (+ strand)
Length: 278
Type: CDS
Position: Chr04:3007995..3008275 (+ strand)
Length: 281
Type: CDS
Position: Chr04:3008276..3012296 (+ strand)
Length: 4021
Type: three_prime_UTR


>Vigan.04G035000.01
AGAGCTCTTT TTCTACAATA TTACACATCC AATTCCATAC CATTCAGCTC ATATTACTCC AATCTCACTG AAAAAAGGTT
GCTAACTCTC GGCACCACTC GTATCATATA GTTGATAACA TCAGGGAATG AGGCTTGTCA TATCAGCTGC ATGTGTTCTA
GTGCTATTCT CTTGTGCAGC TGCGTATGAT CCTTTGGATC CAAATGGAAA CGTAACGATC AAATGGGATG TTGTGTCTTG
GACACCAGAT GGCTATGTAG CAGTGGTAAC GATGAGCAAT TTCCAAATGT TTCGGCACAT CATGAATCCC GGGTGGACCT
TGTCGTGGAC GTGGGCAAAG AAGGAAGTAA TATGGTCCAT GGTAGGAGCT CAAACAACAG AGCAAGGAGA CTGCTCTAAG
TTCAAAGGCA ATGTACCTCA CTGCTGCAAG AAAACTCCCA CAGTTGTAGA CTTGCTCCCT GGTGTACCTT ACAATCAACA
ATTCTCAAAC TGTTGTAAGG GTGGAGTGGT GGCAGCATGG GGCCAAGACC CTTCAGCAGC AGTTTCATCC TTCCAAGTCA
GTATTGGGTT AGCCGGCACT TCAAACAAGA CTGTTAAACT TCCCAAGAAC TTCACTCTCT TGGGTCCAGG ACCAGGTTAC
ACTTGTGGTC CTGCCAAGGT TGTTCCTTCC ACCGTTTTCC TTACACCTGA CAAGCGCCGC AAGACTCAAG CACTGATGAC
ATGGAATGTT ACTTGCACAT ACTCACAATT TCTGGCAAGA AAGAACCCAG GTTGCTGTGT ATCTTTGTCA TCCTTTTACA
ACGAGACCAT TACCCCTTGT CCCTCTTGTG CATGTGGATG CCAGAACAGG AGGAACTGTG TCAAGAGTGA CTCTAAACGT
ATCAACATGG TGGGGATTCA CACTCCAAAG AAAGACAATG AACCATTGCT ACAGTGCACT CATCATATGT GCCCAATAAG
AGTACACTGG CACGTGAAGC TCAACTACAA GGACTATTGG AGAGTCAAGG TTGCCGTAAC AAATTTCAAC TACAGGATGA
ACTACTCCCT CTGGACTCTT GCTGTTCAGC ATCCAAATCT TAACAATGTC ACCCAAGTTT TCAGCTTTGA TTACAAGCCT
CTACTTCCAT ACGAGTCCAT AAATGATACT GGTATGTTCT ATGGAATGAA ATACTTTAAC GATCTATTGA TGGAAGCTGG
ACCGACTGGG AATGTTCAAT CAGAAATTCT TCTTCAGAAA GATAAGGATA CATTCACTCT CAAGCAGGGG TGGGCATTTC
CTCGCAAGGT CTACTTTAAT GGCGAAGAAT GCATGCTGCC ACCGCCAGAT ACCTACCCGA TCCTTCCTAA CTCTGCCCCT
TTGAACCTAT TGAACTTCCC AAAATTCATA TTCACAATGC TTGTCATGCT AGCTGTTTTG TGAACTAGCA CATAAGCAAG
ATTCAATTTT TTTTCTGTGA AATTTTGAAG CCAAGTTTTC TTACACCCAC ATAACGTGCA TCAGGTATGA AGATTCTTCT
ATAGGAATTG TTTGAAAACA CCAAACTAAA CTCATGAATT TGTGAGCCGA TCCATGAGCG CTGATCGGGT GCTGAATAGC
GAATATAATT CCATGCAATG ATTTTGTTTG AATCGTGTAA ATGCTTATAT GGCAATGCTG TAATGGATAT TGGATCCCAC
TTCTTCCTTT TATTCAGGTA CTGTTTAGAT CGCATCGAGT GTGATACAAA ATAGTTCTGT GTAGGAAACT GTAAGTAAAA
GACCACTATC ATTTCAAACC CACATATGAT TCTAGTCTAT ATTTTCATGT GACATGTTGG TGCGTATATT TATTATAATT
ACAGTTACAT CATAATAACG ATACATACAT CATTGAATTA CAACAAACAC AAACAAAAAA CAAGTTCTAC CACCAATGTG
CTGAACCCTC GGTAACAAAC CATCGGACAT GTGAAGCTTA TCTTGAGTTG CCACTAGATG TCATCCTCGT TCCTCCCTCA
TGCTTCAAAT GACAGATTGA CGTCACAAAT GAGTCAAAAC TGATCTGACT GAAAATTTTC TGTTACAAGG CTAAGTGTAC
CACAGAAAAA GAACTTTATG CGTGGGCATA AAACACCAAG GCTACCAAAG AAGCTATCAC TAAGGCAAAC AAGGAAACCT
CTTGCCGAGA ACCAGCATTA GGTAACCACG GATAAGCATC AGGTGGTGGC ATGACACAGT TGTCACCGTT GAAGTAGATC
CTTCGAGGAA AAGCCCATCC CTTATCAAAA GTAAAAGTTG CTTTATCCTT TCGGAAGAGT AGCTCGGATT GAACATTGCC
ATTAGGGCCA GCTTGGTTGA GAAAATCATT ATAGAACTTA ACTCCCCATA GCATTGCTGT ATCATCTGTA AAGGGAACTT
AAAAATCAGT ACTTGCTTTC AAATTTGTGT AAAAAGGGAG TAAAAGTTTG ATGCTTTATT TCGAAGAAAT AAGAAATACA
CAGCATTCAA GAAAATTCCT AAGCCCAGAA ATTTAAAACA AAGAAGTTGC CTCACTTACT TATTGTACCG TAAGGGGTCA
ATGACTTGTA GTTGAAACTG AATAGTTGAG TCAAATTGTC AAAGTTTGGA TGTTGAACAA CCATGTTCCA CTCAGAATAG
TTCATCCTGT AATTAAAATT AGTAATAGTA ACTTTTACAC GCCAGTACTC CTTGTAGTTT AGCTTAACAT GCCAGTGGAT
TCGGACTGGA CACATATGAC TGGTACACTG AACCAAAGGT GAAAAGTTAT TCTTCCCAGA GCCAGAAACA ACCGATGCCA
AATGTGGGGT ATTTGGACTG TAACCACAGA AAGGAAATAT ATAAGTGTAC AACTTGGTGG CTAGAAGGAA ATGACAATTC
ACTTAATGGT GGAAACTTAC TTCACACAAC TTCCTGACTG AGATGAATTA CCCTGGCAAC CACATGCACA TGTTGGGCAC
GGCACAATAG TATCATTATA GAAAGATGAA AGTGAGACAC AGCAAGAGGG AGTTTTCTGA GCTAGAAATT GTGAGTATGT
GCATGTCACA TTCCATGTCA CTGCAATAAA CAAGAGTTAT ATAATGAATA TAGTTACTTA TATGACAACT GTAAACTTCA
ATTAACTGTA AGAGAATTCT TAACATTAGT CTCAGATTTT GTTACCAACA AAACCTACAT CTGGCGGATG GCACAGTTGA
AGAAGAGTTT GAGGTTGGAA GGAGGCAGCA GAAAGATAAA TAATCATATT GGCAACCATG AAAATGACAT TAAAAGTCCT
ACAACTTACT CAGTGCTTGG GTCACTCTCC TTTTGTCTGC TTGAATGAAT TGGGTGGGTC TCACAATCTT GGCTGGACCA
CAAGTATAAC CTGGTCCTGG TGCATGCAGG GTAAAGTTTT TCGGGACTTT GACAGTTTTG TTTGTGGTAC CAGCTCTACC
AACACTAACT TGAAATGATG AAACAGCATT GGTAGGATCC TGCACCCAAG AACTGAGCAC CCCACCTTTG CAGCAATTTG
CAATTTGTTG ATTGTAAGGT GTTCCAGGAA GCAAATCCAC AACGGTCGGA TCCTTCTTAC AGCAATGTGG AATACCTCCC
TTAAATTTTG AACAATCTCC TTGTTCAGTG GTCTGCGATC CCATCATGCT CCATATTACC TCCTTTTTTG CCCATGTCCA
TCCTAGTGAC CAGCCAGGTG AAGCAATATG ACGATATTGT TGGAAATTGT TCATTGTAAC AACAGCCTGC ACATTCAGTG
GTATCTTAGA TATCTAAATA ACTAACAGAA GAAAATTAAG CTAAAGTCAC TTTAAATATA TATAATCACT AATTTAAATA
AATTCATCTG TATAATTGAG TTATCAACCT TGTTCATTAA TTAAAACTTC AATAGTAAAT GAACACTAAC ATAATATAGT
TGTAACACGG CTCATGATTG TGACATGAAA CTCGGACCAT GTCAGGTTTC TAGCTGATAT AAAATTACTT TATCCAAAAC
TCTATTATCC AAGAATTGAT ATATTACATG AGATGCAGCT GACAAGAACA TGCATATGCA TCACAAAAGA CGGTGAGCCA
CCGGTGGAAA GAAAAGGAGT AAATCCATGC ATAACACCTG TTTTGCTTCT CACATTAATG TTTGTTATTG TAAAAGAGTA
TACTTACTAC ATATCCATCA GGGGTCCAAC TTATAATATC CCATTTGATT GTGATATTCC CATTTGGGTC AAGCGGATCA
TAAGCATCTG AAAGATAAAC ATCCAACAGC AAGAGGAAAG CAATTAAAAG GAAAGGAAAG AAAACAAAGT AAATGTCGAA
CCTCTAAATA TCCATATAGT ATATTACAAA GTACACACGG TAGAAATGAT TAGACACGCA TTTGCCATAA TTGCTCAAGC
AGTCACAAAA ATAACAGAGG AAATAAGCAA ATACATTGTT GAAGTCAACG GCAGGTGAAG TTATAGTTTT TTTATCAGTA
CATATTTTAG CATGTATGAT TCATAATTCC ATCAATTAAA CTGGAAGATA TCTGGGATCT AAAATATGCA TGGACCTTTA
TACATGAATT ATTCCATAAA CAGCCAAAAC TGATCAGCAT CGGTGACTGC TTACTCAAGT CCTCATGCAG AGTATCCCTA
ATTACAGGGT TCTTAGGCAC AAATCTCGTG GAAGCAATCA TAATTTCAAC TCAAAACCGT GAGGTAAACA AAAAGACAAA
CCGTGAACTC ACTTCTCATT TGACTCAACA AAAATTCAAA TGCGAAATCA ATTCTAATCA AAAGATAGTC GGAACACAAC
TTTCATTAAG CTCCCTGTTA AAAATGAAAT CTTTATAGTA ACAAAACAAT GTAAACAGCA TATTTTCTGC ACAAAACATT
GGCAGAAACA AGATTACCCT TCAAGGCTAA TAAAGGATAA AAATTTTCCA CAACAGGACA AAACCCACTT TCTTTATCAA
ATTCAAAGCA CAAAGGCAGC ATCTTTCATA ACTCAGAAGC CTTCATTTAA AGAACGAAAA GGGCGTAATG TCCACGCAGC
ATAAAATGAA GACCACCAGA AAATAGAAAA TGCTAAGCAT CTAATGAAAA CTGAACAAAG TCACAGAACC AATGAAAATT
CCAAGACACA GATAAAGAAA AAAGAGAAAG AAAACAGTAA TGGGGTGAAC CTGTGGAAGT GAAGGAAGTA AAATACAGCA
GAACCAAGAA CAATATGCAA GGAGTTGCTT TTGGTAACAG AGAGAAACCC ATTTTGGATG CCACAAGAAG GTGAGTGGTC
TGAGTTCTTG CCTGAACAGT TCAAGATCTG TGACAGAGAA GACTAGAAAT AAAGAAAAAG AAGAAGGGGA GAGAGATAGA
GAGAGTGAAA AAAAGCAAGA GAGAGAGAGT GGAAAAAATA AGCGGCAGAA ACGGACTATC TAGTTTGTCC CAGTTGGCTC
ATCA

>Vigan.04G035000.01
ATGAGGCTTG TCATATCAGC TGCATGTGTT CTAGTGCTAT TCTCTTGTGC AGCTGCGTAT GATCCTTTGG ATCCAAATGG
AAACGTAACG ATCAAATGGG ATGTTGTGTC TTGGACACCA GATGGCTATG TAGCAGTGGT AACGATGAGC AATTTCCAAA
TGTTTCGGCA CATCATGAAT CCCGGGTGGA CCTTGTCGTG GACGTGGGCA AAGAAGGAAG TAATATGGTC CATGGTAGGA
GCTCAAACAA CAGAGCAAGG AGACTGCTCT AAGTTCAAAG GCAATGTACC TCACTGCTGC AAGAAAACTC CCACAGTTGT
AGACTTGCTC CCTGGTGTAC CTTACAATCA ACAATTCTCA AACTGTTGTA AGGGTGGAGT GGTGGCAGCA TGGGGCCAAG
ACCCTTCAGC AGCAGTTTCA TCCTTCCAAG TCAGTATTGG GTTAGCCGGC ACTTCAAACA AGACTGTTAA ACTTCCCAAG
AACTTCACTC TCTTGGGTCC AGGACCAGGT TACACTTGTG GTCCTGCCAA GGTTGTTCCT TCCACCGTTT TCCTTACACC
TGACAAGCGC CGCAAGACTC AAGCACTGAT GACATGGAAT GTTACTTGCA CATACTCACA ATTTCTGGCA AGAAAGAACC
CAGGTTGCTG TGTATCTTTG TCATCCTTTT ACAACGAGAC CATTACCCCT TGTCCCTCTT GTGCATGTGG ATGCCAGAAC
AGGAGGAACT GTGTCAAGAG TGACTCTAAA CGTATCAACA TGGTGGGGAT TCACACTCCA AAGAAAGACA ATGAACCATT
GCTACAGTGC ACTCATCATA TGTGCCCAAT AAGAGTACAC TGGCACGTGA AGCTCAACTA CAAGGACTAT TGGAGAGTCA
AGGTTGCCGT AACAAATTTC AACTACAGGA TGAACTACTC CCTCTGGACT CTTGCTGTTC AGCATCCAAA TCTTAACAAT
GTCACCCAAG TTTTCAGCTT TGATTACAAG CCTCTACTTC CATACGAGTC CATAAATGAT ACTGGTATGT TCTATGGAAT
GAAATACTTT AACGATCTAT TGATGGAAGC TGGACCGACT GGGAATGTTC AATCAGAAAT TCTTCTTCAG AAAGATAAGG
ATACATTCAC TCTCAAGCAG GGGTGGGCAT TTCCTCGCAA GGTCTACTTT AATGGCGAAG AATGCATGCT GCCACCGCCA
GATACCTACC CGATCCTTCC TAACTCTGCC CCTTTGAACC TATTGAACTT CCCAAAATTC ATATTCACAA TGCTTGTCAT
GCTAGCTGTT TTGTGA

>Vigan.04G035000.01
MRLVISAACV LVLFSCAAAY DPLDPNGNVT IKWDVVSWTP DGYVAVVTMS NFQMFRHIMN PGWTLSWTWA KKEVIWSMVG
AQTTEQGDCS KFKGNVPHCC KKTPTVVDLL PGVPYNQQFS NCCKGGVVAA WGQDPSAAVS SFQVSIGLAG TSNKTVKLPK
NFTLLGPGPG YTCGPAKVVP STVFLTPDKR RKTQALMTWN VTCTYSQFLA RKNPGCCVSL SSFYNETITP CPSCACGCQN
RRNCVKSDSK RINMVGIHTP KKDNEPLLQC THHMCPIRVH WHVKLNYKDY WRVKVAVTNF NYRMNYSLWT LAVQHPNLNN
VTQVFSFDYK PLLPYESIND TGMFYGMKYF NDLLMEAGPT GNVQSEILLQ KDKDTFTLKQ GWAFPRKVYF NGEECMLPPP
DTYPILPNSA PLNLLNFPKF IFTMLVMLAV L*